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	<id>https://beikolab.cs.dal.ca/gengis/?action=history&amp;feed=atom&amp;title=New_Features_in_GenGIS_2.0</id>
	<title>New Features in GenGIS 2.0 - Revision history</title>
	<link rel="self" type="application/atom+xml" href="https://beikolab.cs.dal.ca/gengis/?action=history&amp;feed=atom&amp;title=New_Features_in_GenGIS_2.0"/>
	<link rel="alternate" type="text/html" href="https://beikolab.cs.dal.ca/gengis/?title=New_Features_in_GenGIS_2.0&amp;action=history"/>
	<updated>2026-04-09T16:23:14Z</updated>
	<subtitle>Revision history for this page on the wiki</subtitle>
	<generator>MediaWiki 1.34.0</generator>
	<entry>
		<id>https://beikolab.cs.dal.ca/gengis/?title=New_Features_in_GenGIS_2.0&amp;diff=1665&amp;oldid=prev</id>
		<title>Beiko: /* Python Plug-in Manager */</title>
		<link rel="alternate" type="text/html" href="https://beikolab.cs.dal.ca/gengis/?title=New_Features_in_GenGIS_2.0&amp;diff=1665&amp;oldid=prev"/>
		<updated>2012-03-29T16:39:42Z</updated>

		<summary type="html">&lt;p&gt;&lt;span dir=&quot;auto&quot;&gt;&lt;span class=&quot;autocomment&quot;&gt;Python Plug-in Manager&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
&lt;table class=&quot;diff diff-contentalign-left&quot; data-mw=&quot;interface&quot;&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
				&lt;tr class=&quot;diff-title&quot; lang=&quot;en&quot;&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #222; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #222; text-align: center;&quot;&gt;Revision as of 16:39, 29 March 2012&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l5&quot; &gt;Line 5:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 5:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;GenGIS now supports the use of saved sessions: you can open up your datasets in GenGIS, manipulate them, and use the Save function to store your work in a &amp;#039;.ggis&amp;#039; file that can be opened later. See the [[The_GenGIS_2.0_Manual|manual]] for more details.&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;GenGIS now supports the use of saved sessions: you can open up your datasets in GenGIS, manipulate them, and use the Save function to store your work in a &amp;#039;.ggis&amp;#039; file that can be opened later. See the [[The_GenGIS_2.0_Manual|manual]] for more details.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt;−&lt;/td&gt;&lt;td style=&quot;color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== &lt;del class=&quot;diffchange diffchange-inline&quot;&gt;Python Plug-in Manager &lt;/del&gt;==&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;Plugins for Data Analysis &lt;/ins&gt;==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;We have improved the Python / Rpy2 manager in the new version of GenGIS, and version 2 makes it considerably easier to perform certain standard statistical tests that we have implemented as plugins, see the [[Body_Location_Tutorial|Body location tutorial]] for examples. You can develop your own plugins using Python, and also build your own Python / Rpy2 scripts to be executed directly in GenGIS.&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;We have improved the Python / Rpy2 manager in the new version of GenGIS, and version 2 makes it considerably easier to perform certain standard statistical tests that we have implemented as plugins, see the [[Body_Location_Tutorial|Body location tutorial]] for examples. You can develop your own plugins using Python, and also build your own Python / Rpy2 scripts to be executed directly in GenGIS.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>Beiko</name></author>
		
	</entry>
	<entry>
		<id>https://beikolab.cs.dal.ca/gengis/?title=New_Features_in_GenGIS_2.0&amp;diff=1664&amp;oldid=prev</id>
		<title>Beiko at 16:37, 29 March 2012</title>
		<link rel="alternate" type="text/html" href="https://beikolab.cs.dal.ca/gengis/?title=New_Features_in_GenGIS_2.0&amp;diff=1664&amp;oldid=prev"/>
		<updated>2012-03-29T16:37:05Z</updated>

		<summary type="html">&lt;p&gt;&lt;/p&gt;
&lt;table class=&quot;diff diff-contentalign-left&quot; data-mw=&quot;interface&quot;&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
				&lt;tr class=&quot;diff-title&quot; lang=&quot;en&quot;&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #222; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #222; text-align: center;&quot;&gt;Revision as of 16:37, 29 March 2012&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l1&quot; &gt;Line 1:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 1:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;GenGIS 2 is a major release that adds several new features in addition to a complete code overhaul and a number of bugfixes. Here is a summary of what&amp;#039;s new:&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;GenGIS 2 is a major release that adds several new features in addition to a complete code overhaul and a number of bugfixes. Here is a summary of what&amp;#039;s new:&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt;−&lt;/td&gt;&lt;td style=&quot;color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== &lt;del class=&quot;diffchange diffchange-inline&quot;&gt;Serialization Support (Save &lt;/del&gt;and &lt;del class=&quot;diffchange diffchange-inline&quot;&gt;Open &lt;/del&gt;Sessions&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;) &lt;/del&gt;==&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;Saving &lt;/ins&gt;and &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;Opening &lt;/ins&gt;Sessions ==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;   &lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;   &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;GenGIS now supports the use of saved sessions: you can open up your datasets in GenGIS, manipulate them, and use the Save function to store your work in a &amp;#039;.ggis&amp;#039; file that can be opened later. See the [[The_GenGIS_2.0_Manual|manual]] for more details.&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;GenGIS now supports the use of saved sessions: you can open up your datasets in GenGIS, manipulate them, and use the Save function to store your work in a &amp;#039;.ggis&amp;#039; file that can be opened later. See the [[The_GenGIS_2.0_Manual|manual]] for more details.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>Beiko</name></author>
		
	</entry>
	<entry>
		<id>https://beikolab.cs.dal.ca/gengis/?title=New_Features_in_GenGIS_2.0&amp;diff=1661&amp;oldid=prev</id>
		<title>Beiko at 15:21, 29 March 2012</title>
		<link rel="alternate" type="text/html" href="https://beikolab.cs.dal.ca/gengis/?title=New_Features_in_GenGIS_2.0&amp;diff=1661&amp;oldid=prev"/>
		<updated>2012-03-29T15:21:54Z</updated>

		<summary type="html">&lt;p&gt;&lt;/p&gt;
&lt;table class=&quot;diff diff-contentalign-left&quot; data-mw=&quot;interface&quot;&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
				&lt;tr class=&quot;diff-title&quot; lang=&quot;en&quot;&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #222; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #222; text-align: center;&quot;&gt;Revision as of 15:21, 29 March 2012&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l1&quot; &gt;Line 1:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 1:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt;−&lt;/td&gt;&lt;td style=&quot;color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;GenGIS 2 is a major release that adds several new features. Here is a summary of what&amp;#039;s new:&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;GenGIS 2 is a major release that adds several new features &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;in addition to a complete code overhaul and a number of bugfixes&lt;/ins&gt;. Here is a summary of what&amp;#039;s new:&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Serialization Support (Save and Open Sessions) ==&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;== Serialization Support (Save and Open Sessions) ==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>Beiko</name></author>
		
	</entry>
	<entry>
		<id>https://beikolab.cs.dal.ca/gengis/?title=New_Features_in_GenGIS_2.0&amp;diff=1660&amp;oldid=prev</id>
		<title>Beiko: New page: GenGIS 2 is a major release that adds several new features. Here is a summary of what&#039;s new:  == Serialization Support (Save and Open Sessions) ==   GenGIS now supports the use of saved se...</title>
		<link rel="alternate" type="text/html" href="https://beikolab.cs.dal.ca/gengis/?title=New_Features_in_GenGIS_2.0&amp;diff=1660&amp;oldid=prev"/>
		<updated>2012-03-29T15:21:11Z</updated>

		<summary type="html">&lt;p&gt;New page: GenGIS 2 is a major release that adds several new features. Here is a summary of what&amp;#039;s new:  == Serialization Support (Save and Open Sessions) ==   GenGIS now supports the use of saved se...&lt;/p&gt;
&lt;p&gt;&lt;b&gt;New page&lt;/b&gt;&lt;/p&gt;&lt;div&gt;GenGIS 2 is a major release that adds several new features. Here is a summary of what&amp;#039;s new:&lt;br /&gt;
&lt;br /&gt;
== Serialization Support (Save and Open Sessions) ==&lt;br /&gt;
 &lt;br /&gt;
GenGIS now supports the use of saved sessions: you can open up your datasets in GenGIS, manipulate them, and use the Save function to store your work in a &amp;#039;.ggis&amp;#039; file that can be opened later. See the [[The_GenGIS_2.0_Manual|manual]] for more details.&lt;br /&gt;
&lt;br /&gt;
== Python Plug-in Manager ==&lt;br /&gt;
&lt;br /&gt;
We have improved the Python / Rpy2 manager in the new version of GenGIS, and version 2 makes it considerably easier to perform certain standard statistical tests that we have implemented as plugins, see the [[Body_Location_Tutorial|Body location tutorial]] for examples. You can develop your own plugins using Python, and also build your own Python / Rpy2 scripts to be executed directly in GenGIS.&lt;br /&gt;
&lt;br /&gt;
== Linear gradient testing ==&lt;br /&gt;
&lt;br /&gt;
The first version of GenGIS allowed a user to specify a geographic axis, and test whether the fit of a particular phylogenetic tree to that axis was significantly better than random. We have now added the ability to test all possible linear gradients at once, and get an interactive report that shows how well different gradients fit the tree.&lt;br /&gt;
&lt;br /&gt;
== Improved Mac version ==&lt;br /&gt;
&lt;br /&gt;
Several graphical features of GenGIS were previously unavailable to Mac users because of problems with the wxWidgets libraries that the GenGIS GUI uses. We have now implemented a series of fixes to make color picking, dialog box interactions, and other GUI elements consistent between Windows and Mac.&lt;br /&gt;
&lt;br /&gt;
== Updated Layers, Location and Sequence Tabs ==&lt;br /&gt;
&lt;br /&gt;
The interface for interacting with layers has changed, making it easier to select and deselect locations and sequences (this can also be done using the Analysis -&amp;gt; Select sequence dialog tool). The legends for sequences and locations are also much more informative, showing the mapping of color, shape and size attributes to different locations and sequences in the data set.&lt;/div&gt;</summary>
		<author><name>Beiko</name></author>
		
	</entry>
</feed>