Several of our recent software projects are hosted here.<\/p>\n
GenGIS<\/a> – Geospatial Analysis of Environmental Genomic Data<\/p>\n Remarkably, some of my postdoc software is still alive and kicking, although it probably has more anthropological than scientific value:<\/p>\n GANN – Genetic Algorithm Neural Networks for biological pattern detection<\/a><\/p>\n WOOF – a Word-Oriented Objective Function for validation of multiple sequence alignments<\/a><\/p>\n EEEP – Efficient Evaluation of Edit Paths to infer lateral genetic transfer events from phylogenetic tree comparisons<\/a>: biologically sound but sluggish, superseded by the algorithmic magic of rSPR<\/a>.<\/p>\n EvolSimulator – simulation of gene, protein, and genome evolution: <\/a>A super-fun tool to simulate lateral gene transfer under different hypotheses of biased gene transfer.<\/p>\n The data from the 2005 PNAS paper “Highways of gene sharing in prokaryotes” can be found here<\/a>.<\/p>\n","protected":false},"excerpt":{"rendered":" Software Several of our recent software projects are hosted here. GenGIS – Geospatial Analysis of Environmental Genomic Data Remarkably, some of my postdoc software is still alive and kicking, although it probably has more anthropological than scientific value: GANN – Genetic Algorithm Neural Networks for biological pattern detection WOOF – a Word-Oriented Objective Function for … <\/p>\n
\nData Sets<\/h2>\n