{"id":36,"date":"2012-10-16T11:26:21","date_gmt":"2012-10-16T14:26:21","guid":{"rendered":"http:\/\/localhost\/beikolabWordPress\/?page_id=36"},"modified":"2020-11-21T14:52:17","modified_gmt":"2020-11-21T18:52:17","slug":"publications","status":"publish","type":"page","link":"https:\/\/beikolab.cs.dal.ca\/?page_id=36","title":{"rendered":"Publications"},"content":{"rendered":"

In case of non-updates, break glass to access Google Scholar page<\/a>.<\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Range-wide parallel climate-associated genomic clines in Atlantic salmon<\/a><\/p>\n
NW Jeffery, RRE Stanley, BF Wringe, J Guijarro-Sabaniel, V Bourret, …<\/div>\n
Royal Society Open Science 4 (11), 171394<\/div>\n<\/td>\n
2017<\/td>\n<\/tr>\n
SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology<\/a><\/p>\n
A Petkau, P Mabon, C Sieffert, NC Knox, J Cabral, M Iskander, M Iskander, …<\/div>\n
Microbial Genomics 3 (6)<\/div>\n<\/td>\n
2017<\/td>\n<\/tr>\n
Discovery of an expanded set of avian leucosis subgroup E proviruses in chickens using Vermillion, a novel sequence capture and analysis pipeline<\/a><\/p>\n
K Rutherford, CJ Meehan, MGI Langille, SG Tyack, JC McKay, …<\/div>\n
Poultry science 96 (5), 1516-1516<\/div>\n<\/td>\n
2017<\/td>\n<\/tr>\n
RAD sequencing reveals genomewide divergence between independent invasions of the European green crab (Carcinus maenas) in the Northwest Atlantic<\/a><\/p>\n
NW Jeffery, C DiBacco, M Van Wyngaarden, LC Hamilton, RRE Stanley, …<\/div>\n
Ecology and evolution 7 (8), 2513-2524<\/div>\n<\/td>\n
2017<\/td>\n<\/tr>\n
Ananke: Temporal clustering reveals ecological dynamics of microbial communities<\/a><\/p>\n
MW Hall, RR Rohwer, J Perrie, KD McMahon, RG Beiko<\/div>\n
PeerJ Preprints<\/div>\n<\/td>\n
2017<\/td>\n<\/tr>\n
MEGASAT: automated inference of microsatellite genotypes from sequence data<\/a><\/p>\n
L Zhan, IG Paterson, BA Fraser, B Watson, IR Bradbury, …<\/div>\n
Molecular ecology resources 17 (2), 247-256<\/div>\n<\/td>\n
2017<\/td>\n<\/tr>\n
Inter-personal diversity and temporal dynamics of dental, tongue, and salivary microbiota in the healthy oral cavity<\/a><\/p>\n
MW Hall, N Singh, KF Ng, DK Lam, MB Goldberg, HC Tenenbaum, …<\/div>\n
npj Biofilms and Microbiomes 3 (1), 2<\/div>\n<\/td>\n
2017<\/td>\n<\/tr>\n
Scaling Up the Phylogenetic Detection of Lateral Gene Transfer Events<\/a><\/p>\n
CX Chan, RG Beiko, MA Ragan<\/div>\n
Bioinformatics: Volume I: Data, Sequence Analysis, and Evolution, 421-432<\/div>\n<\/td>\n
2017<\/td>\n<\/tr>\n
A new way to contemplate Darwin’s tangled bank: how DNA barcodes are reconnecting biodiversity science and biomonitoring<\/a><\/p>\n
M Hajibabaei, DJ Baird, NA Fahner, R Beiko, GB Golding<\/div>\n
Phil. Trans. R. Soc. B 371 (1702), 20150330<\/div>\n<\/td>\n
2016<\/td>\n<\/tr>\n
Discovery of an expanded set of avian leukosis subgroup E proviruses in chickens using Vermillion, a novel sequence capture and analysis pipeline<\/a><\/p>\n
K Rutherford, CJ Meehan, MGI Langille, SG Tyack, JC McKay, …<\/div>\n
Poultry science 95 (10), 2250-2258<\/div>\n<\/td>\n
2016<\/td>\n<\/tr>\n
Fixed-parameter and approximation algorithms for maximum agreement forests of multifurcating trees<\/a><\/p>\n
C Whidden, RG Beiko, N Zeh<\/div>\n
Algorithmica 74 (3), 1019-1054<\/div>\n<\/td>\n
2016<\/td>\n<\/tr>\n
simDEF: definition-based semantic similarity measure of gene ontology terms for functional similarity analysis of genes<\/a><\/p>\n
A Pesaranghader, S Matwin, M Sokolova, RG Beiko<\/div>\n
Bioinformatics 32 (9), 1380-1387<\/div>\n<\/td>\n
2015<\/td>\n<\/tr>\n
Microbial malaise: how can we classify the microbiome?<\/a><\/p>\n
RG Beiko<\/div>\n
Trends in microbiology 23 (11), 671-679<\/div>\n<\/td>\n
2015<\/td>\n<\/tr>\n
AGING, FRAILTY AND THE MICROBIOME<\/a><\/p>\n
RG Beiko<\/div>\n
GERONTOLOGIST 55, 383-383<\/div>\n<\/td>\n
2015<\/td>\n<\/tr>\n
Phylogenetic approaches to microbial community classification<\/a><\/p>\n
J Ning, RG Beiko<\/div>\n
Microbiome 3 (1), 47<\/div>\n<\/td>\n
2015<\/td>\n<\/tr>\n
Correction: Genomic Comparison of Non-Typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky Isolates from Broiler C…<\/a><\/p>\n
AS Dhanani, G Block, K Dewar, V Forgetta, E Topp, RG Beiko, MS Diarra<\/div>\n
PloS one 10 (9), e0137697<\/div>\n<\/td>\n
2015<\/td>\n<\/tr>\n
Transfer of energy pathway genes in microbial enhanced biological phosphorus removal communities<\/a><\/p>\n
DHJ Wong, RG Beiko<\/div>\n
BMC genomics 16 (1), 526<\/div>\n<\/td>\n
2015<\/td>\n<\/tr>\n
Genomic comparison of non-typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky isolates from broiler chickens<\/a><\/p>\n
AS Dhanani, G Block, K Dewar, V Forgetta, E Topp, RG Beiko, MS Diarra<\/div>\n
PloS one 10 (6), e0128773<\/div>\n<\/td>\n
2015<\/td>\n<\/tr>\n
Frailty and the microbiome<\/a><\/p>\n
CJ Meehan, MGI Langille, RG Beiko<\/div>\n
Frailty in Aging 41, 54-65<\/div>\n<\/td>\n
2015<\/td>\n<\/tr>\n
RITA: rapid identification of high-confidence taxonomic assignments for metagenomic data<\/a><\/p>\n
NJ MacDonald, DH Parks, RG Beiko<\/div>\n
Encyclopedia of Metagenomics, 613-618<\/div>\n<\/td>\n
2015<\/td>\n<\/tr>\n
STAMP: statistical analysis of metagenomic profiles<\/a><\/p>\n
DH Parks, RG Beiko<\/div>\n
Encyclopedia of Metagenomics, 641-645<\/div>\n<\/td>\n
2015<\/td>\n<\/tr>\n
Microbial shifts in the aging mouse gut<\/a><\/p>\n
MGI Langille, CJ Meehan, JE Koenig, AS Dhanani, RA Rose, SE Howlett, …<\/div>\n
Microbiome 2 (1), 50<\/div>\n<\/td>\n
2014<\/td>\n<\/tr>\n
Conservation and Stewardship of the Human Microbiome<\/a>
\nK O’Doherty, JD Neufeld, FSL Brinkman, H Gardner, DS Guttman, RG Beiko
\nProceedings of the National Academy of Sciences 111 (40), 14312-14313<\/td>\n		2014<\/td>\n<\/tr>\n
Bioinformatics: Hypothesis free-Or Hypotheses Freed?<\/a>
\nRG Beiko
\nBioScience 64 (9), 844-845<\/td>\n		2014<\/td>\n<\/tr>\n
STAMP: statistical analysis of taxonomic and functional profiles<\/a>
\nDH Parks, GW Tyson, P Hugenholtz, RG Beiko
\nBioinformatics<\/td>\n		2014<\/td>\n<\/tr>\n
Supertrees based on the subtree prune-and-regraft distance<\/a>
\nC Whidden, N Zeh, RG Beiko
\nSystematic Biology 63 (4), 566-581<\/td>\n		2014<\/td>\n<\/tr>\n
A phylogenomic view of ecological specialization in the Lachnospiraceae, a family of digestive tract-associated bacteria<\/a>
\nCJ Meehan, RG Beiko
\nGenome Biology and Evolution 6 (3), 703-713<\/td>\n		2014<\/td>\n<\/tr>\n
Interactions in the microbiome: communities of organisms and communities of genes<\/a>
\nE Boon, CJ Meehan, C Whidden, DHJ Wong, MGI Langille, RG Beiko
\nFEMS Microbiology Reviews 38 (1), 90-118<\/td>\n		2013<\/td>\n<\/tr>\n
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences<\/a>
\nMGI Langille, J Zaneveld, JG Caporaso, D MacDonald, D Knights, JA Reyes, JC Clemente, DE Burkepile, RLV Thurber, R Knight, RG Beiko, C Huttenhower
\nNature Biotechnology 31 (9), 814-821<\/td>\n		2013<\/td>\n<\/tr>\n
Fixed-parameter algorithms for maximum agreement forests<\/a>
\nC Whidden, RG Beiko, N Zeh
\nSIAM Journal on Computing 42 (4), 1431-1466<\/td>\n		2013<\/td>\n<\/tr>\n
SPANNER: Taxonomic assignment of sequences using pyramid matching of similarity profiles<\/a>
\nMS Porter, RG Beiko
\nBioinformatics<\/td>\n		2013<\/td>\n<\/tr>\n
Supertrees based on the subtree prune-and-regraft distance<\/a>
\nC Whidden, N Zeh, RG Beiko
\nPeerJ PrePrints<\/td>\n		2013<\/td>\n<\/tr>\n
GenGIS 2: Geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework<\/a>
\nRG Beiko, DH Parks, T Mankowski, S Zangooei, MS Porter, DG Armanini, DJ …
\nPeerJ PrePrints<\/td>\n		2013<\/td>\n<\/tr>\n
Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests of Multifurcating Trees<\/a>
\nC Whidden, RG Beiko, N Zeh
\narXiv preprint arXiv:1305.0512<\/td>\n		2013<\/td>\n<\/tr>\n
Measuring community similarity with phylogenetic networks<\/a>
\nDH Parks, RG Beiko
\nMolecular biology and evolution 29 (12), 3947-3958<\/td>\n		2012<\/td>\n<\/tr>\n
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs<\/a>
\nBA Curtis, G Tanifuji, F Burki, A Gruber, M Irimia, S Maruyama, MC Arias, SG …
\nNature 492 (7427), 59-65<\/td>\n		2012<\/td>\n<\/tr>\n
Comparative Genomic and Phylogenetic Approaches to Characterize the Role of Genetic Recombination in Mycobacterial Evolution<\/a>
\nSE Smith, P Showers-Corneli, CN Dardenne, HH Harpending, DP Martin, RG Beiko
\nPloS one 7 (11), e50070<\/td>\n		2012<\/td>\n<\/tr>\n
Lateral gene transfer of an ABC transporter complex between major constituents of the human gut microbiome<\/a>
\nCJ Meehan, RG Beiko
\nBMC microbiology 12 (1), 248<\/td>\n		2012<\/td>\n<\/tr>\n
Measures of phylogenetic differentiation provide robust and complementary insights into microbial communities<\/a>
\nDH Parks, RG Beiko
\nThe ISME Journal<\/td>\n		2012<\/td>\n<\/tr>\n
Rapid identification of high-confidence taxonomic assignments for metagenomic data<\/a>
\nNJ MacDonald, DH Parks, RG Beiko
\nNucleic acids research 40 (14), e111-e111<\/td>\n		2012<\/td>\n<\/tr>\n
Genome and low-iron response of an oceanic diatom adapted to chronic iron limitation<\/a>
\nM Lommer, M Specht, AS Roy, L Kraemer, R Andreson, MA Gutowska, J Wolf, SV …
\nGenome biology 13 (7), R66<\/td>\n		2012<\/td>\n<\/tr>\n
Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community<\/a>
\nL Hug, R Beiko, A Rowe, R Richardson, E Edwards
\nBMC genomics 13 (1), 327<\/td>\n		2012<\/td>\n<\/tr>\n
Human microbiome: a genetic bazaar for microbes?<\/a>
\nMGI Langille, CJ Meehan, RG Beiko
\nCurrent Biology 22 (1), R20-R22<\/td>\n		2012<\/td>\n<\/tr>\n
Fixed-parameter and approximation algorithms for maximum agreement forests<\/a>
\nC Whidden, RG Beiko, N Zeh
\narXiv preprint arXiv:1108.2664<\/td>\n		2011<\/td>\n<\/tr>\n
Classifying short genomic fragments from novel lineages using composition and homology<\/a>
\nDH Parks, NJ MacDonald, RG Beiko
\nBMC bioinformatics 12 (1), 328<\/td>\n		2011<\/td>\n<\/tr>\n
Lateral transfer of genes and gene fragments in Staphylococcus extends beyond mobile elements<\/a>
\nCX Chan, RG Beiko, MA Ragan
\nJournal of bacteriology 193 (15), 3964-3977<\/td>\n		2011<\/td>\n<\/tr>\n
Telling the whole story in a 10,000-genome world<\/a>
\nRG Beiko
\nBiol Direct 6, 34<\/td>\n		2011<\/td>\n<\/tr>\n
Assembling networks of microbial genomes using linear programming<\/a>
\nC Holloway, RG Beiko
\nBMC evolutionary biology 10 (1), 360<\/td>\n		2010<\/td>\n<\/tr>\n
Monitoring associations between clade-level variation, overall community structure and ecosystem function in enhanced biological phosphorus removal (EBPR) systems using terminal-restriction fragment length polymorphism (T-RFLP)<\/a>
\nFR Slater, CR Johnson, LL Blackall, RG Beiko, PL Bond
\nWater research 44 (17), 4908-4923<\/td>\n		2010<\/td>\n<\/tr>\n
Gene sharing and genome evolution: networks in trees and trees in networks<\/a>
\nRG Beiko
\nBiology & Philosophy 25 (4), 659-673<\/td>\n		2010<\/td>\n<\/tr>\n
Efficient learning of microbial genotype\u2013phenotype association rules<\/a>
\nNJ MacDonald, RG Beiko
\nBioinformatics 26 (15), 1834-1840<\/td>\n		2010<\/td>\n<\/tr>\n
Identifying biologically relevant differences between metagenomic communities<\/a>
\nDH Parks, RG Beiko
\nBioinformatics 26 (6), 715-721<\/td>\n		2010<\/td>\n<\/tr>\n
Genetic recombination and bacterial population structure<\/a>
\nDP Martin, RG Beiko
\nBacterial Population Genetics in Infectious Disease, 61-85<\/td>\n		2010<\/td>\n<\/tr>\n
Distinguishing microbial genome fragments based on their composition: evolutionary and comparative genomic perspectives<\/a>
\nSC Perry, RG Beiko
\nGenome biology and evolution 2, 117<\/td>\n		2010<\/td>\n<\/tr>\n
Fast FPT algorithms for computing rooted agreement forests: Theory and experiments<\/a>
\nC Whidden, RG Beiko, N Zeh
\nExperimental Algorithms, 141-153<\/td>\n		2010<\/td>\n<\/tr>\n
GenGIS: A geospatial information system for genomic data<\/a>
\nDH Parks, M Porter, S Churcher, S Wang, C Blouin, J Whalley, S Brooks, RG Beiko
\nGenome Research 19 (10), 1896-1904<\/td>\n		2009<\/td>\n<\/tr>\n
Prokaryotic evolution and the tree of life are two different things<\/a>
\nE Bapteste, MA O\u2019Malley, RG Beiko, M Ereshefsky, JP Gogarten, L Franklin …
\nBiol Direct 4 (1), 34<\/td>\n		2009<\/td>\n<\/tr>\n
SeqMonitor: Influenza Analysis Pipeline and Visualization<\/a>
\nN MacDonald, D Parks, R Beiko
\nPLoS currents 1<\/td>\n		2009<\/td>\n<\/tr>\n
Tracking the evolution and geographic spread of Influenza A<\/a>
\nD Parks, N MacDonald, R Beiko
\nPLoS currents 1<\/td>\n		2009<\/td>\n<\/tr>\n
Quantitative visualizations of hierarchically organized data in a geographic context<\/a>
\nDH Parks, RG Beiko
\nGeoinformatics, 2009 17th International Conference on, 1-6<\/td>\n		2009<\/td>\n<\/tr>\n
Lateral genetic transfer: open issues<\/a>
\nMA Ragan, RG Beiko
\nPhilosophical Transactions of the Royal Society B: Biological Sciences 364 …<\/td>\n		2009<\/td>\n<\/tr>\n
Radi\u00e9: visualizing taxon properties and parsimonious mappings using a radial phylogenetic tree<\/a>
\nJ Whalley, S Brooks, RG Beiko
\nBioinformatics 25 (5), 672-673<\/td>\n		2009<\/td>\n<\/tr>\n
Are protein domains modules of lateral genetic transfer?<\/a>
\nCX Chan, AE Darling, RG Beiko, MA Ragan
\nPLoS One 4 (2), e4524<\/td>\n		2009<\/td>\n<\/tr>\n
Untangling hybrid phylogenetic signals: horizontal gene transfer and artifacts of phylogenetic reconstruction<\/a>
\nRG Beiko, MA Ragan
\nHorizontal Gene Transfer, 241-256<\/td>\n		2009<\/td>\n<\/tr>\n
Lateral transfer of genes and gene fragments in prokaryotes<\/a>
\nCX Chan, RG Beiko, AE Darling, MA Ragan
\nGenome biology and evolution 1, 429<\/td>\n		2009<\/td>\n<\/tr>\n
The impact of reticulate evolution on genome phylogeny<\/a>
\nRG Beiko, WF Doolittle, RL Charlebois
\nSystematic biology 57 (6), 844-856<\/td>\n		2008<\/td>\n<\/tr>\n
Large\u2010scale detection of recombination in nucleotide sequences<\/a>
\nCX Chan, RG Beiko, MA Ragan
\nAIP Conference Proceedings 971, 101<\/td>\n		2008<\/td>\n<\/tr>\n
Spatial analysis and visualization of genetic biodiversity<\/a>
\nRG Beiko, J Whalley, S Wang, H Clair, G Smolyn, S Churcher, M Porter, C …
\nFree and Open Source Software for Geospatial<\/td>\n		2008<\/td>\n<\/tr>\n
Detecting Lateral Genetic Transfer<\/a>
\nRG Beiko, MA Ragan<\/td>\n		2008<\/td>\n<\/tr>\n
Genetic transfer in Staphylococcus: a case study of 13 genomes<\/a>
\nCX Chan, RG Beiko, MA Ragan
\narXiv preprint arXiv:0709.2031<\/td>\n		2007<\/td>\n<\/tr>\n
Protein domains as units of genetic transfer<\/a>
\nCX Chan, RG Beiko, AE Darling, MA Ragan
\narXiv preprint arXiv:0709.2030<\/td>\n		2007<\/td>\n<\/tr>\n
Units of genetic transfer in prokaryotes<\/a>
\nCX Chan, RG Beiko, MA Ragan
\narXiv preprint arXiv:0709.2027<\/td>\n		2007<\/td>\n<\/tr>\n
A two-phase strategy for detecting recombination in nucleotide sequences<\/a>
\nCX Chan, RG Beiko, MA Ragan
\nSouth African Computer Journal<\/td>\n		2007<\/td>\n<\/tr>\n
Virulence profiling of Streptococcus dysgalactiae subspecies equisimilis isolated from infected humans reveals 2 distinct genetic lineages that do not segregate with their phenotypes or propensity to cause diseases<\/a>
\nMR Davies, DJ McMillan, RG Beiko, V Barroso, R Geffers, KS Sriprakash, GS …
\nClinical infectious diseases 44 (11), 1442-1454<\/td>\n		2007<\/td>\n<\/tr>\n
A simulation test bed for hypotheses of genome evolution<\/a>
\nRG Beiko, RL Charlebois
\nBioinformatics 23 (7), 825-831<\/td>\n		2007<\/td>\n<\/tr>\n
Collapsible 3D Terrains for GIS Visualization<\/a>
\nS Wang, RG Beiko, S Brooks
\nGeovisualization 2007<\/td>\n		2007<\/td>\n<\/tr>\n
Genes for the majority of group A streptococcal virulence factors and extracellular surface proteins do not confer an increased propensity to cause invasive disease<\/a>
\nDJ McMillan, RG Beiko, R Geffers, J Buer, LM Schouls, BJM Vlaminckx, WJB …
\nClinical infectious diseases 43 (7), 884-891<\/td>\n		2006<\/td>\n<\/tr>\n
Detecting recombination in evolving nucleotide sequences<\/a>
\nCX Chan, RG Beiko, MA Ragan
\nBMC bioinformatics 7 (1), 412<\/td>\n		2006<\/td>\n<\/tr>\n
Searching for convergence in phylogenetic Markov chain Monte Carlo<\/a>
\nRG Beiko, JM Keith, TJ Harlow, MA Ragan
\nSystematic biology 55 (4), 553-565<\/td>\n		2006<\/td>\n<\/tr>\n
Phylogenetic identification of lateral genetic transfer events<\/a>
\nR Beiko, N Hamilton
\nBMC evolutionary biology 6 (1), 15<\/td>\n		2006<\/td>\n<\/tr>\n
Do different surrogate methods detect lateral genetic transfer events of different relative ages?<\/a>
\nMA Ragan, TJ Harlow, RG Beiko
\nTrends in microbiology 14 (1), 4-8<\/td>\n		2006<\/td>\n<\/tr>\n
Surrogate methods for detecting laterally transferred genes<\/a>
\nMA Ragan, TJ Harlow, RG Beiko
\nTrends in Microbiology 14 (1), 4-8<\/td>\n		2006<\/td>\n<\/tr>\n
Highways of gene sharing in prokaryotes<\/a>
\nRG Beiko, TJ Harlow, MA Ragan
\nProceedings of the National Academy of Sciences of the United States of …<\/td>\n		2005<\/td>\n<\/tr>\n
A word-oriented approach to alignment validation<\/a>
\nRG Beiko, CX Chan, MA Ragan
\nBioinformatics 21 (10), 2230-2239<\/td>\n		2005<\/td>\n<\/tr>\n
GANN: genetic algorithm neural networks for the detection of conserved combinations of features in DNA<\/a>
\nRG Beiko, RL Charlebois
\nBMC bioinformatics 6 (1), 36<\/td>\n		2005<\/td>\n<\/tr>\n
Genome phylogenies<\/a>
\nRL Charlebois, RG Beiko, MA Ragan
\nOrganelles, genomes and eukaryote phylogeny: An evolutionary synthesis in …<\/td>\n		2004<\/td>\n<\/tr>\n
Characterization of species\u2010specific genes using a flexible, web\u2010based querying system<\/a>
\nRL Charlebois, GD Clarke, RG Beiko, A Jean
\nFEMS microbiology letters 225 (2), 213-220<\/td>\n		2003<\/td>\n<\/tr>\n
Microbial phylogenomics: branching out<\/a>
\nRL Charlebois, RG Beiko, MA Ragan
\nNature 421 (6920), 217-217<\/td>\n		2003<\/td>\n<\/tr>\n
Expression and genomic organization of the zebrafish chaperonin gene complex<\/a>
\nCC Martin, CH Tsang, RG Beiko, PH Krone
\nGenome 45 (5), 804-811<\/td>\n		2002<\/td>\n<\/tr>\n
Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores<\/a>
\nGD Clarke, RG Beiko, MA Ragan, RL Charlebois
\nJournal of bacteriology 184 (8), 2072-2080<\/td>\n		2002<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"

In case of non-updates, break glass to access Google Scholar page. Range-wide parallel climate-associated genomic clines in Atlantic salmon NW Jeffery, RRE Stanley, BF Wringe, J Guijarro-Sabaniel, V Bourret, … Royal Society Open Science 4 (11), 171394 2017 SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology A Petkau, P Mabon, C Sieffert, … <\/p>\n

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