Quick installation instructions for STAMP - Revision history

Dparks: /* Source code on Linux */

2016-02-25T19:31:39Z

Source code on Linux

Dparks at 04:52, 26 June 2015

2015-06-26T04:52:22Z

Dparks at 22:43, 14 June 2015

2015-06-14T22:43:39Z

Dparks at 13:28, 7 June 2015

2015-06-07T13:28:56Z

Dparks at 22:42, 3 June 2015

2015-06-03T22:42:35Z

Dparks at 22:41, 3 June 2015

2015-06-03T22:41:40Z

Dparks at 03:30, 5 December 2014

2014-12-05T03:30:29Z

Dparks at 23:07, 4 August 2014

2014-08-04T23:07:12Z

Dparks at 00:47, 29 July 2014

2014-07-29T00:47:34Z

Dparks at 22:08, 6 July 2014

2014-07-06T22:08:15Z

@@ Line 23: / Line 23: @@
 STAMP can be install on Linux (tested under Ubuntu 14.04) using the following commands:
    sudo apt-get install freetype* python-pip python-dev python-numpy python-scipy python-matplotlib
    sudo pip install STAMP

@@ Line 3: / Line 3: @@
 == Binary release ==
-An [https://github.com/dparks1134/STAMP/releases/download/v2.1.2/STAMP_2_1_2.exe executable binary] is available for Microsoft Windows. It has been tested under Windows XP SP3 and Windows 7, but will likely also run under Windows Vista. The Windows binary can also be run on Linux or OS X using [http://www.virtualbox.org/ Virtual Box]. Due to differences in how the user interface appears under Windows, Linux and OS X we recommended using Virtual Box to run STAMP. Please note that the first time your run STAMP it may take a minute or more to load. After this, it will start up more quickly.
+An [https://github.com/dparks1134/STAMP/releases/download/v2.1.3/STAMP_2_1_3.exe executable binary] is available for Microsoft Windows. It has been tested under Windows XP SP3 and Windows 7, but will likely also run under Windows Vista. The Windows binary can also be run on Linux or OS X using [http://www.virtualbox.org/ Virtual Box]. Due to differences in how the user interface appears under Windows, Linux and OS X we recommended using Virtual Box to run STAMP. Please note that the first time your run STAMP it may take a minute or more to load. After this, it will start up more quickly.
 Note: if you have a pristine copy of Microsoft Windows installed, you may need to install the Microsoft Visual C++ 2008 Redistributable Package ([http://www.microsoft.com/downloads/details.aspx?FamilyID=9b2da534-3e03-4391-8a4d-074b9f2bc1bf&displaylang=en 32-bit],[http://www.microsoft.com/downloads/details.aspx?familyid=bd2a6171-e2d6-4230-b809-9a8d7548c1b6&displaylang=en 64-bit]). This package contains a number of commonly required runtime components and as such you likely already have them. STAMP will fail with a message indicating the "configuration is incorrect" if you require this package.
@@ Line 18: / Line 18: @@
 * [https://pypi.python.org/pypi/pyqi/ pyqi]
-After you have installed Python and the above libraries, extract the [https://github.com/dparks1134/STAMP/archive/v2.1.2.zip STAMP source code files] to a directory (e.g., C:\STAMP). You can now run STAMP by moving to the source directory and entering <tt>'python ./bin/STAMP'</tt> on your command line. If you get an error message indicating Python cannot be found you likely need to add it to your system path (check out this [http://docs.python.org/using/windows.html#excursus-setting-environment-variables website] for instructions). If you have trouble installing STAMP, please feel free to contact us.
+After you have installed Python and the above libraries, extract the [https://github.com/dparks1134/STAMP/archive/v2.1.3.zip STAMP source code files] to a directory (e.g., C:\STAMP). You can now run STAMP by moving to the source directory and entering <tt>'python ./bin/STAMP'</tt> on your command line. If you get an error message indicating Python cannot be found you likely need to add it to your system path (check out this [http://docs.python.org/using/windows.html#excursus-setting-environment-variables website] for instructions). If you have trouble installing STAMP, please feel free to contact us.
 == Source code on Linux ==

@@ Line 3: / Line 3: @@
 == Binary release ==
-An [https://github.com/dparks1134/STAMP/releases/download/v2.1.1/STAMP_2_1_1.exe executable binary] is available for Microsoft Windows. It has been tested under Windows XP SP3 and Windows 7, but will likely also run under Windows Vista. The Windows binary can also be run on Linux or OS X using [http://www.virtualbox.org/ Virtual Box]. Due to differences in how the user interface appears under Windows, Linux and OS X we recommended using Virtual Box to run STAMP. Please note that the first time your run STAMP it may take a minute or more to load. After this, it will start up more quickly.
+An [https://github.com/dparks1134/STAMP/releases/download/v2.1.2/STAMP_2_1_2.exe executable binary] is available for Microsoft Windows. It has been tested under Windows XP SP3 and Windows 7, but will likely also run under Windows Vista. The Windows binary can also be run on Linux or OS X using [http://www.virtualbox.org/ Virtual Box]. Due to differences in how the user interface appears under Windows, Linux and OS X we recommended using Virtual Box to run STAMP. Please note that the first time your run STAMP it may take a minute or more to load. After this, it will start up more quickly.
 Note: if you have a pristine copy of Microsoft Windows installed, you may need to install the Microsoft Visual C++ 2008 Redistributable Package ([http://www.microsoft.com/downloads/details.aspx?FamilyID=9b2da534-3e03-4391-8a4d-074b9f2bc1bf&displaylang=en 32-bit],[http://www.microsoft.com/downloads/details.aspx?familyid=bd2a6171-e2d6-4230-b809-9a8d7548c1b6&displaylang=en 64-bit]). This package contains a number of commonly required runtime components and as such you likely already have them. STAMP will fail with a message indicating the "configuration is incorrect" if you require this package.
@@ Line 18: / Line 18: @@
 * [https://pypi.python.org/pypi/pyqi/ pyqi]
-After you have installed Python and the above libraries, extract the [https://github.com/dparks1134/STAMP/archive/v2.1.1.zip STAMP source code files] to a directory (e.g., C:\STAMP). You can now run STAMP by moving to the source directory and entering <tt>'python ./bin/STAMP'</tt> on your command line. If you get an error message indicating Python cannot be found you likely need to add it to your system path (check out this [http://docs.python.org/using/windows.html#excursus-setting-environment-variables website] for instructions). If you have trouble installing STAMP, please feel free to contact us.
+After you have installed Python and the above libraries, extract the [https://github.com/dparks1134/STAMP/archive/v2.1.2.zip STAMP source code files] to a directory (e.g., C:\STAMP). You can now run STAMP by moving to the source directory and entering <tt>'python ./bin/STAMP'</tt> on your command line. If you get an error message indicating Python cannot be found you likely need to add it to your system path (check out this [http://docs.python.org/using/windows.html#excursus-setting-environment-variables website] for instructions). If you have trouble installing STAMP, please feel free to contact us.
 == Source code on Linux ==

@@ Line 3: / Line 3: @@
 == Binary release ==
-An [https://github.com/dparks1134/STAMP/releases/download/v2.1.0/STAMP_2_1_0.exe executable binary] is available for Microsoft Windows. It has been tested under Windows XP SP3 and Windows 7, but will likely also run under Windows Vista. The Windows binary can also be run on Linux or OS X using [http://www.virtualbox.org/ Virtual Box]. Due to differences in how the user interface appears under Windows, Linux and OS X we recommended using Virtual Box to run STAMP. Please note that the first time your run STAMP it may take a minute or more to load. After this, it will start up more quickly.
+An [https://github.com/dparks1134/STAMP/releases/download/v2.1.1/STAMP_2_1_1.exe executable binary] is available for Microsoft Windows. It has been tested under Windows XP SP3 and Windows 7, but will likely also run under Windows Vista. The Windows binary can also be run on Linux or OS X using [http://www.virtualbox.org/ Virtual Box]. Due to differences in how the user interface appears under Windows, Linux and OS X we recommended using Virtual Box to run STAMP. Please note that the first time your run STAMP it may take a minute or more to load. After this, it will start up more quickly.
 Note: if you have a pristine copy of Microsoft Windows installed, you may need to install the Microsoft Visual C++ 2008 Redistributable Package ([http://www.microsoft.com/downloads/details.aspx?FamilyID=9b2da534-3e03-4391-8a4d-074b9f2bc1bf&displaylang=en 32-bit],[http://www.microsoft.com/downloads/details.aspx?familyid=bd2a6171-e2d6-4230-b809-9a8d7548c1b6&displaylang=en 64-bit]). This package contains a number of commonly required runtime components and as such you likely already have them. STAMP will fail with a message indicating the "configuration is incorrect" if you require this package.
@@ Line 18: / Line 18: @@
 * [https://pypi.python.org/pypi/pyqi/ pyqi]
-After you have installed Python and the above libraries, extract the [https://github.com/dparks1134/STAMP/archive/v2.1.0.zip STAMP source code files] to a directory (e.g., C:\STAMP). You can now run STAMP by moving to the source directory and entering <tt>'python ./bin/STAMP'</tt> on your command line. If you get an error message indicating Python cannot be found you likely need to add it to your system path (check out this [http://docs.python.org/using/windows.html#excursus-setting-environment-variables website] for instructions). If you have trouble installing STAMP, please feel free to contact us.
+After you have installed Python and the above libraries, extract the [https://github.com/dparks1134/STAMP/archive/v2.1.1.zip STAMP source code files] to a directory (e.g., C:\STAMP). You can now run STAMP by moving to the source directory and entering <tt>'python ./bin/STAMP'</tt> on your command line. If you get an error message indicating Python cannot be found you likely need to add it to your system path (check out this [http://docs.python.org/using/windows.html#excursus-setting-environment-variables website] for instructions). If you have trouble installing STAMP, please feel free to contact us.
 == Source code on Linux ==

@@ Line 18: / Line 18: @@
 * [https://pypi.python.org/pypi/pyqi/ pyqi]
-After you have installed Python and the above libraries, extract the [https://github.com/dparks1134/STAMP/archive/v2.0.8.zip STAMP source code files] to a directory (e.g., C:\STAMP). You can now run STAMP by moving to the source directory and entering <tt>'python ./bin/STAMP'</tt> on your command line. If you get an error message indicating Python cannot be found you likely need to add it to your system path (check out this [http://docs.python.org/using/windows.html#excursus-setting-environment-variables website] for instructions). If you have trouble installing STAMP, please feel free to contact us.
+After you have installed Python and the above libraries, extract the [https://github.com/dparks1134/STAMP/archive/v2.1.0.zip STAMP source code files] to a directory (e.g., C:\STAMP). You can now run STAMP by moving to the source directory and entering <tt>'python ./bin/STAMP'</tt> on your command line. If you get an error message indicating Python cannot be found you likely need to add it to your system path (check out this [http://docs.python.org/using/windows.html#excursus-setting-environment-variables website] for instructions). If you have trouble installing STAMP, please feel free to contact us.
 == Source code on Linux ==

@@ Line 3: / Line 3: @@
 == Binary release ==
-An [https://github.com/dparks1134/STAMP/releases/download/v2.0.9/STAMP_2_0_9.exe executable binary] is available for Microsoft Windows. It has been tested under Windows XP SP3 and Windows 7, but will likely also run under Windows Vista. The Windows binary can also be run on Linux or OS X using [http://www.virtualbox.org/ Virtual Box]. Due to differences in how the user interface appears under Windows, Linux and OS X we recommended using Virtual Box to run STAMP. Please note that the first time your run STAMP it may take a minute or more to load. After this, it will start up more quickly.
+An [https://github.com/dparks1134/STAMP/releases/download/v2.1.0/STAMP_2_1_0.exe executable binary] is available for Microsoft Windows. It has been tested under Windows XP SP3 and Windows 7, but will likely also run under Windows Vista. The Windows binary can also be run on Linux or OS X using [http://www.virtualbox.org/ Virtual Box]. Due to differences in how the user interface appears under Windows, Linux and OS X we recommended using Virtual Box to run STAMP. Please note that the first time your run STAMP it may take a minute or more to load. After this, it will start up more quickly.
 Note: if you have a pristine copy of Microsoft Windows installed, you may need to install the Microsoft Visual C++ 2008 Redistributable Package ([http://www.microsoft.com/downloads/details.aspx?FamilyID=9b2da534-3e03-4391-8a4d-074b9f2bc1bf&displaylang=en 32-bit],[http://www.microsoft.com/downloads/details.aspx?familyid=bd2a6171-e2d6-4230-b809-9a8d7548c1b6&displaylang=en 64-bit]). This package contains a number of commonly required runtime components and as such you likely already have them. STAMP will fail with a message indicating the "configuration is incorrect" if you require this package.
@@ Line 48: / Line 48: @@
 * Python 2.7.3
 * PyQt4 4.8.4
-* NumPy 1.8.1
+* NumPy 1.9.1
-* SciPy 0.14.0
+* SciPy 0.15.1
-* matplotlib 1.3.1
+* matplotlib 1.4.2
 * biom-format 2.0.1
 * pyqi 0.3.2
 * h5py 2.3.0 (optional)
 * py2exe 0.6.9