STAMP image gallery - Revision history

Dparks at 00:59, 9 February 2014

2014-02-09T00:59:58Z

2011-08-12T13:49:29Z

2011-08-11T14:18:04Z

2011-08-11T14:12:04Z

2011-08-11T14:07:32Z

2011-08-11T14:06:27Z

2011-08-11T14:02:07Z

2011-08-11T13:56:49Z

2011-08-11T13:20:02Z

2011-08-11T13:08:19Z

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 <gallery widths="300px" heights="300px" perrow="3">
-Image:STAMP2_Windows7_Screenshot.png|Screen capture of STAMP v2.0.0 on Microsoft Windows 7 (x64).
+Image:STAMP2_Windows7_Screenshot.png|STAMP v2.0.0 on Microsoft Windows 7 (x64).
-Image:STAMP2_WindowsXP_screenshot.png|Screen capture of STAMP v2.0.0 on Microsoft Windows XP.
+Image:STAMP2_WindowsXP_screenshot.png|STAMP v2.0.0 on Microsoft Windows XP.
-Image:STAMP2_OSX_Screenshot.png|Screen capture of STAMP v2.0.0 on Apple's Mac OS X Leopard.
+Image:STAMP2_OSX_Screenshot.png|STAMP v2.0.0 on Apple's Mac OS X Leopard.
 Image:ArumugamBarPlot.png|Bar plot showing the abundance of ''Bacteriodes'' within the gut microbiota of individuals assigned to the 3 enterotypes proposed by Arumugam and colleagues (data described in [http://www.ncbi.nlm.nih.gov/pubmed/21508958 Arumugam et al., 2011]).

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 Image:STAMP2_Windows7_Screenshot.png|Screen capture of STAMP v2.0.0 on Microsoft Windows 7 (x64).
 Image:STAMP2_WindowsXP_screenshot.png|Screen capture of STAMP v2.0.0 on Microsoft Windows XP.
-Image:STAMP_OSX_screenshot.png|Screen capture of STAMP v1.0 on Apple's Mac OS X Leopard.
+Image:STAMP2_OSX_Screenshot.png|Screen capture of STAMP v2.0.0 on Apple's Mac OS X Leopard.
 Image:ArumugamBarPlot.png|Bar plot showing the abundance of ''Bacteriodes'' within the gut microbiota of individuals assigned to the 3 enterotypes proposed by Arumugam and colleagues (data described in [http://www.ncbi.nlm.nih.gov/pubmed/21508958 Arumugam et al., 2011]).

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 Image:STAMP2_IronMinSequenceHistogram.png|Sequence histogram for a functional profile of two iron mine metagenomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006]).
 Image:STAMP2_IronMine pValueHistogram.png|p-value histogram for two iron mine metagenomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006]).
-Image:EBPR_Aphosphatis_ScatterplotHistogram.png|Scatterplot with histograms showing the functional profile of A.phosphatis sequences from two EBPR communities(data described in [http://www.ncbi.nlm.nih.gov/pubmed/20130030 Parks and Beiko, 2010]).
+Image:STAMP2_EBPR_Aphosphatis_ScatterPlot.png|Scatterplot with histograms showing the functional profile of A.phosphatis sequences from two EBPR communities(data described in [http://www.ncbi.nlm.nih.gov/pubmed/20130030 Parks and Beiko, 2010]).
 </gallery>

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 Image:STAMP2_IronMinSequenceHistogram.png|Sequence histogram for a functional profile of two iron mine metagenomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006]).
-Image:MultipleComparisonPlots StoreyFDR.png|Multiple comparison plots for assessing the results of Storey's false discovery rate method (see [http://www.ncbi.nlm.nih.gov/pubmed/19033188 Leek and Storey, 2008]).
+Image:STAMP2_IronMine pValueHistogram.png|p-value histogram for two iron mine metagenomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006]).
 Image:EBPR_Aphosphatis_ScatterplotHistogram.png|Scatterplot with histograms showing the functional profile of A.phosphatis sequences from two EBPR communities(data described in [http://www.ncbi.nlm.nih.gov/pubmed/20130030 Parks and Beiko, 2010]).
 </gallery>

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 Image:STAMP2_EBPR_ScatterPlot.png|SEED subsystem scatter plot for a pair of enhanced biological phosphorus removal (EBPR) sludge metagenomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/16998472 Martín et al., 2006]).
-Image:STAMP2_IronMineSequenceHistogram.png|Sequence histogram for a functional profile of two iron mine metagenomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006]).
+Image:STAMP2_IronMinSequenceHistogram.png|Sequence histogram for a functional profile of two iron mine metagenomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006]).
 Image:MultipleComparisonPlots StoreyFDR.png|Multiple comparison plots for assessing the results of Storey's false discovery rate method (see [http://www.ncbi.nlm.nih.gov/pubmed/19033188 Leek and Storey, 2008]).
 Image:IronMine pValueHistogram.png|p-value histogram for two iron mine metagenomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006]).
 Image:EBPR_Aphosphatis_ScatterplotHistogram.png|Scatterplot with histograms showing the functional profile of A.phosphatis sequences from two EBPR communities(data described in [http://www.ncbi.nlm.nih.gov/pubmed/20130030 Parks and Beiko, 2010]).
 </gallery>

@@ Line 10: / Line 10: @@
 Image:STAMP2_TurnbaughMouseProfilePlot.png|Functional profile plot for an obese and a lean mouse microbiome (data described in [http://www.ncbi.nlm.nih.gov/pubmed/17183312 Turnbaugh et al., 2006]).
 Image:STAMP2_RumenErrorBarPlot.png|Extended error bar plot for a pair of bovine rumen microbiomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/19181843 Brulc et al., 2009]).
-Image:EBPR ScatterPlot.png|SEED subsystem scatter plot for a pair of enhanced biological phosphorus removal (EBPR) sludge metagenomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/16998472 Martín et al., 2006]).
+Image:STAMP2_EBPR_ScatterPlot.png|SEED subsystem scatter plot for a pair of enhanced biological phosphorus removal (EBPR) sludge metagenomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/16998472 Martín et al., 2006]).
 Image:IronMineSequenceHistogram.png|Sequence histogram for a functional profile of two iron mine metagenomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006]).

@@ Line 8: / Line 8: @@
 Image:ArumugamPostHocPlot.png|Post-hoc plot indicating that ''Bacteriodes'' is significantly over-represented in enterotype 1 compared to the 2 other enterotypes proposed by Arumugam and colleagues (data described in [http://www.ncbi.nlm.nih.gov/pubmed/21508958 Arumugam et al., 2011]).
-Image:TurnbaughMouseProfilePlot.png|Taxonomic profile plot for an obese and a lean mouse microbiome (data described in [http://www.ncbi.nlm.nih.gov/pubmed/17183312 Turnbaugh et al., 2006]).
+Image:STAMP2_TurnbaughMouseProfilePlot.png|Functional profile plot for an obese and a lean mouse microbiome (data described in [http://www.ncbi.nlm.nih.gov/pubmed/17183312 Turnbaugh et al., 2006]).
 Image:RumenErrorBarPlot.png|Extended error bar plot for a pair of bovine rumen microbiomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/19181843 Brulc et al., 2009]).
 Image:EBPR ScatterPlot.png|SEED subsystem scatter plot for a pair of enhanced biological phosphorus removal (EBPR) sludge metagenomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/16998472 Martín et al., 2006]).