https://beikolab.cs.dal.ca/software/index.php?action=history&feed=atom&title=STAMP_v1.08_example_datasets 2026-06-11T23:35:23Z Revision history for this page on the wiki MediaWiki 1.34.0 https://beikolab.cs.dal.ca/software/index.php?title=STAMP_v1.08_example_datasets&diff=793&oldid=prev 2011-08-10T04:04:19Z

<p>New page: The following data sets were analyzed in &#039;&#039;Parks, D.H. and Beiko, R.G. (2010). Identifying biologically relevant differences between metagenomic communities. Bioinformatics, 26, 715-721.&#039;&#039;...</p> <p><b>New page</b></p><div>The following data sets were analyzed in &#039;&#039;Parks, D.H. and Beiko, R.G. (2010). Identifying biologically relevant differences between metagenomic communities. Bioinformatics, 26, 715-721.&#039;&#039; ([http://bioinformatics.oxfordjournals.org/cgi/content/short/26/6/715 Abstract]):<br /> <br /> * [[Media:RedBlack.spf|SEED functional profile for Soudin iron mine metagenomes]] (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006])<br /> * [[Media:MartinEBPR_A_phosphatis.spf|SEED functional profile for Candidatus Accumulibacter phosphatis]] (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/16998472 Martín et al., 2006])<br /> <br /> <br /> The User&#039;s guide makes use of the following data set:<br /> <br /> * [[Media:MouseTurnbaughMG-RAST_Functional.spf|SEED taxonomic profile for an obese and a lean mouse microbiome]] (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/17183312 Turnbaugh et al., 2006])<br /> <br /> <br /> STAMP is compatible with functional and taxonomic profiles generated by (see User&#039;s guide for details):<br /> <br /> * [http://metagenomics.nmpdr.org/ MG-RAST]<br /> * [http://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=AbundanceProfiles&amp;page=mergedForm IMG/M]<br /> <br /> <br /> &#039;&#039;&#039;Note&#039;&#039;&#039;: these data sets and others can be found in the &lt;tt&gt;examples&lt;/tt&gt; folder of STAMP.</div>

Dparks