Difference between revisions of "SPRSupertrees"

From Bioinformatics Software
Jump to navigationJump to search
m (SPR Supertrees moved to SPRSupertrees: Underscore caused problems citing in latex)
 
(20 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
__NOTOC__
 
__NOTOC__
SPR Supertrees is a software package for computing supertrees that minimize the SPR distance. Please note that this page is under construction.
+
SPR Supertrees is a software package for computing supertrees that minimize the SPR distance.
 +
 
 +
SPR Supertrees is available as C++ source code under the GNU GPL v3.
 +
This is free software, and you are welcome to redistribute it
 +
under certain conditions; See the README for details.
  
 
=== Documentation ===
 
=== Documentation ===
* [[media:README_SPR_Supertrees.txt|README]]
+
* [[SPR Supertrees README|README]]
 
* [[SPR Supertrees version history|Version history]]
 
* [[SPR Supertrees version history|Version history]]
  
 
=== Downloads ===
 
=== Downloads ===
 +
* [[media:spr_supertrees_1_2_1.zip|Version 1.2.1]]
 +
* [[media:spr_supertrees_1_2_0.zip|Version 1.2.0]]
 +
* [[media:spr_supertrees_1_1_1.zip|Version 1.1.1]]
 +
* [[media:spr_supertrees_1_1_0.zip|Version 1.1.0]]
 
* [[media:spr_supertrees_1_0_0.zip|Version 1.0.0]]
 
* [[media:spr_supertrees_1_0_0.zip|Version 1.0.0]]
  
Line 16: Line 24:
 
If you use SPR Supertrees in your research, please cite:
 
If you use SPR Supertrees in your research, please cite:
  
'''Whidden, C., Zeh, N., Beiko, R.G. ''Subtree Prune-and-Regraft Supertrees''.
+
'''Whidden, C., Zeh, N., Beiko, R.G. ''Supertrees based on the subtree prune-and-regraft distance''. 2014. Systematic Biology.''' 63 (4), 566-581. doi:10.1093/sysbio/syu023
  
 
== Contact Information ==
 
== Contact Information ==

Latest revision as of 18:27, 18 June 2014

SPR Supertrees is a software package for computing supertrees that minimize the SPR distance.

SPR Supertrees is available as C++ source code under the GNU GPL v3. This is free software, and you are welcome to redistribute it under certain conditions; See the README for details.

Documentation

Downloads

Examples

Citing SPR Supertrees

If you use SPR Supertrees in your research, please cite:

Whidden, C., Zeh, N., Beiko, R.G. Supertrees based on the subtree prune-and-regraft distance. 2014. Systematic Biology. 63 (4), 566-581. doi:10.1093/sysbio/syu023

Contact Information

SPR Supertrees is in active development and we are interested in discussing all potential applications of this software. We encourage you to send us suggestions for new features. Suggestions, comments, and bug reports can be sent to Chris Whidden (whidden [at] cs.dal.ca). If reporting a bug, please provide as much information as possible and a simplified version of the data set which causes the bug. This will allow us to quickly resolve the issue.

Funding

The development of SPR Supertrees has been supported by several organizations: