Difference between revisions of "STAMP example datasets"
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The User's guide makes use of the following dataset: | The User's guide makes use of the following dataset: | ||
| − | * Function profile for an obese and lean mouse microbiome (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/17183312 Turnbaugh et al., 2006]). | + | * Function profile for an obese and lean mouse microbiome (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/17183312 Turnbaugh et al., 2006]) |
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| + | STAMP is compatiable with profiles generated by (see User's guide for details): | ||
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| + | * [[http://metagenomics.nmpdr.org/ MG-RAST]] | ||
| + | * IMG/M | ||
Revision as of 06:10, 22 November 2009
The following datasets were analyzed in Identifying biologically important differences between pairs of metagenomic communities (Parks et al., Bioinformatics, submitted):
- SEED profile for Soudin iron mine metagenomes (data originally described in Edwards et al., 2006)
- SEED profile for Candidatus Accumulibacter phosphatis (data originally described in Martín et al., 2006)
The User's guide makes use of the following dataset:
- Function profile for an obese and lean mouse microbiome (data originally described in Turnbaugh et al., 2006)
STAMP is compatiable with profiles generated by (see User's guide for details):
- [MG-RAST]
- IMG/M
