Difference between revisions of "STAMP example datasets"
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| − | STAMP is compatible with profiles generated by (see User's guide for details): | + | STAMP is compatible with functional and taxonomic profiles generated by (see User's guide for details): |
* [http://metagenomics.nmpdr.org/ MG-RAST] | * [http://metagenomics.nmpdr.org/ MG-RAST] | ||
* [http://img.jgi.doe.gov/cgi-bin/m/main.cgi IMG/M] | * [http://img.jgi.doe.gov/cgi-bin/m/main.cgi IMG/M] | ||
Revision as of 06:11, 22 November 2009
The following datasets were analyzed in Identifying biologically important differences between pairs of metagenomic communities (Parks et al., Bioinformatics, submitted):
- SEED profile for Soudin iron mine metagenomes (data originally described in Edwards et al., 2006)
- SEED profile for Candidatus Accumulibacter phosphatis (data originally described in Martín et al., 2006)
The User's guide makes use of the following dataset:
- Function profile for an obese and lean mouse microbiome (data originally described in Turnbaugh et al., 2006)
STAMP is compatible with functional and taxonomic profiles generated by (see User's guide for details):
