Difference between revisions of "STAMP example datasets"
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The User's guide makes use of the following dataset: | The User's guide makes use of the following dataset: | ||
| − | * | + | * [[Media:MouseTurnbaugh.spf|Functional profile for an obese and lean mouse microbiome]] (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/17183312 Turnbaugh et al., 2006]) |
Revision as of 06:14, 22 November 2009
The following datasets were analyzed in Identifying biologically important differences between pairs of metagenomic communities (Parks et al., Bioinformatics, submitted):
- SEED profile for Soudin iron mine metagenomes (data originally described in Edwards et al., 2006)
- SEED profile for Candidatus Accumulibacter phosphatis (data originally described in Martín et al., 2006)
The User's guide makes use of the following dataset:
- Functional profile for an obese and lean mouse microbiome (data originally described in Turnbaugh et al., 2006)
STAMP is compatible with functional and taxonomic profiles generated by (see User's guide for details):
