Difference between revisions of "STAMP example datasets"

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The following data sets were analyzed in ''Identifying biologically important differences between pairs of metagenomic communities'' (Parks, DH and Beiko, RG, Bioinformatics, 2009 submitted):  
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The following data sets were analyzed in ''Identifying biologically important differences between pairs of metagenomic communities'' (Parks, D.H. and Beiko, R.G., Bioinformatics, 2009 submitted):  
  
 
* [[Media:RedBlack.spf|SEED functional profile for Soudin iron mine metagenomes]] (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006])
 
* [[Media:RedBlack.spf|SEED functional profile for Soudin iron mine metagenomes]] (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006])

Revision as of 16:46, 14 January 2010

The following data sets were analyzed in Identifying biologically important differences between pairs of metagenomic communities (Parks, D.H. and Beiko, R.G., Bioinformatics, 2009 submitted):


The User's guide makes use of the following data set:


STAMP is compatible with functional and taxonomic profiles generated by (see User's guide for details):


Note: these data sets and others can be found in the examples folder of STAMP.