Difference between revisions of "STAMP example datasets"
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| − | The following data sets were analyzed in ' | + | The following data sets were analyzed in '''Parks, D.H. and Beiko, R.G. (2010). Identifying biologically relevant differences between metagenomic communities. ''Bioinformatics'', 26, 715-721.''' ([http://bioinformatics.oxfordjournals.org/cgi/content/short/26/6/715 Abstract]): |
* [[Media:RedBlack.spf|SEED functional profile for Soudin iron mine metagenomes]] (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006]) | * [[Media:RedBlack.spf|SEED functional profile for Soudin iron mine metagenomes]] (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006]) | ||
Revision as of 02:20, 20 July 2010
The following data sets were analyzed in Parks, D.H. and Beiko, R.G. (2010). Identifying biologically relevant differences between metagenomic communities. Bioinformatics, 26, 715-721. (Abstract):
- SEED functional profile for Soudin iron mine metagenomes (data originally described in Edwards et al., 2006)
- SEED functional profile for Candidatus Accumulibacter phosphatis (data originally described in Martín et al., 2006)
The User's guide makes use of the following data set:
- SEED taxonomic profile for an obese and a lean mouse microbiome (data originally described in Turnbaugh et al., 2006)
STAMP is compatible with functional and taxonomic profiles generated by (see User's guide for details):
Note: these data sets and others can be found in the examples folder of STAMP.
