Difference between revisions of "STAMP image gallery"

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[[Image:STAMP_Screenshot.png|thumb|500px|center|Screen capture of STAMP v1.0.]]
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<gallery widths="300px" heights="300px" perrow="3">
[[Image:TurnbaughMouseProfilePlot.png|frame|center|Taxonomy profile plot for an obese and lean mouse microbiome (data described in [http://www.ncbi.nlm.nih.gov/pubmed/17183312 Turnbaugh et al., 2006]).]]
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Image:STAMP2_Windows7_Screenshot.png|STAMP v2.0.0 on Microsoft Windows 7 (x64).
[[Image:EBPR ScatterPlot.png|frame|center|SEED subsystem scatter plot for a pair of enhanced biological phosphorus removal (EBPR) sludge metagenomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/16998472 Martín et al., 2006]).]]
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Image:STAMP2_WindowsXP_screenshot.png|STAMP v2.0.0 on Microsoft Windows XP.
[[Image:IronMineSequenceHistogram.png|frame|center|Sequence histogram for a pair of iron mine metagenomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006]).]]
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Image:STAMP2_OSX_Screenshot.png|STAMP v2.0.0 on Apple's Mac OS X Leopard.
[[Image:MultipleComparisonPlots StoreyFDR.png|frame|center|Multiple comparison plots for assessing the results of Storey's false discovery rate method (see [http://www.ncbi.nlm.nih.gov/pubmed/19033188 Leek and Storey, 2008]). ]]
 
  
<gallery>
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Image:ArumugamBarPlot.png|Bar plot showing the abundance of ''Bacteriodes'' within the gut microbiota of individuals assigned to the 3 enterotypes proposed by Arumugam and colleagues (data described in [http://www.ncbi.nlm.nih.gov/pubmed/21508958 Arumugam et al., 2011]).
File:STAMP_Screenshot.png
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Image:ArumugamBoxPlot.png|Box plot showing the abundance of ''Bacteriodes'' within the gut microbiota of individuals assigned to the 3 enterotypes proposed by Arumugam and colleagues (data described in [http://www.ncbi.nlm.nih.gov/pubmed/21508958 Arumugam et al., 2011]).
File:TurnbaughMouseProfilePlot.png
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Image:ArumugamPostHocPlot.png|Post-hoc plot indicating that ''Bacteriodes'' is significantly over-represented in enterotype 1 compared to the 2 other enterotypes proposed by Arumugam and colleagues (data described in [http://www.ncbi.nlm.nih.gov/pubmed/21508958 Arumugam et al., 2011]).
File:EBPR ScatterPlot.png
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File:IronMineSequenceHistogram.png
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Image:STAMP2_TurnbaughMouseProfilePlot.png|Functional profile plot for an obese and a lean mouse microbiome (data described in [http://www.ncbi.nlm.nih.gov/pubmed/17183312 Turnbaugh et al., 2006]).
File:MultipleComparisonPlots StoreyFDR.png
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Image:STAMP2_RumenErrorBarPlot.png|Extended error bar plot for a pair of bovine rumen microbiomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/19181843 Brulc et al., 2009]).
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Image:STAMP2_EBPR_ScatterPlot.png|SEED subsystem scatter plot for a pair of enhanced biological phosphorus removal (EBPR) sludge metagenomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/16998472 Martín et al., 2006]).
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Image:STAMP2_IronMinSequenceHistogram.png|Sequence histogram for a functional profile of two iron mine metagenomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006]).
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Image:STAMP2_IronMine pValueHistogram.png|p-value histogram for two iron mine metagenomes (data described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006]).
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Image:STAMP2_EBPR_Aphosphatis_ScatterPlot.png|Scatterplot with histograms showing the functional profile of A.phosphatis sequences from two EBPR communities(data described in [http://www.ncbi.nlm.nih.gov/pubmed/20130030 Parks and Beiko, 2010]).
 
</gallery>
 
</gallery>

Latest revision as of 00:59, 9 February 2014