Difference between revisions of "Supported Beta-diversity Measures"

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(New page: * Bray-Curtis (aka: normalized weighted UniFrac, Sorensen, Steinhaus, Odum, percentage difference, pairwise Whittaker) * Canberra * Chi-squared * Coefficient of similarity * Complete tree ...)
 
 
(5 intermediate revisions by the same user not shown)
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* Bray-Curtis (aka: normalized weighted UniFrac, Sorensen, Steinhaus, Odum, percentage difference, pairwise Whittaker)
+
==Quantitative measures==
 +
* Bray-Curtis (aka: normalized weighted UniFrac, percentage difference)
 
* Canberra
 
* Canberra
 
* Chi-squared
 
* Chi-squared
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* Gower
 
* Gower
 
* Hellinger
 
* Hellinger
* Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath)
+
* Kulczynski
 
* Lennon compositional difference
 
* Lennon compositional difference
 
* Manhattan (aka: taxicab, city-block, unnormalized weighted UniFrac)
 
* Manhattan (aka: taxicab, city-block, unnormalized weighted UniFrac)
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* Rao's Hp
 
* Rao's Hp
 
* Soergel (aka: Jaccard, unweighted UniFrac, Ruzicka, Marczewski-Steinhaus, percentage remoteness)
 
* Soergel (aka: Jaccard, unweighted UniFrac, Ruzicka, Marczewski-Steinhaus, percentage remoteness)
* Species profile
+
* Tamas coefficient (TC) (aka: simple matching coefficient)
* Tamas coefficient (TC) (aka: simple matching coefficient)
+
* Weighted correlation
 
* Whittaker index of association
 
* Whittaker index of association
 
* Yue-Clayton (aka: similarity ratio)
 
* Yue-Clayton (aka: similarity ratio)
 +
 +
==Qualitative measures==
 +
* Bray-Curtis (aka: Sorensen, PhyloSor, Dice)
 +
* Canberra
 +
* Coefficient of similarity
 +
* Euclidean
 +
* Gower
 +
* Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath)
 +
* Lennon compositional difference
 +
* Manhattan
 +
* Mean nearest neighbour distance (aka: comdistnn)
 +
* Mean phylogenetic distance (aka: comdist)
 +
* Pearson product-moment correlation coefficient
 +
* Soergel (aka: Jaccard, unweighted UniFrac)
 +
* Tamas coefficient (TC) (aka: simple matching coefficient)
 +
* Weighted correlation

Latest revision as of 13:49, 8 June 2012

Quantitative measures

  • Bray-Curtis (aka: normalized weighted UniFrac, percentage difference)
  • Canberra
  • Chi-squared
  • Coefficient of similarity
  • Complete tree
  • Euclidean
  • Fst
  • Gower
  • Hellinger
  • Kulczynski
  • Lennon compositional difference
  • Manhattan (aka: taxicab, city-block, unnormalized weighted UniFrac)
  • Mean nearest neighbour distance (aka: comdistnn)
  • Mean phylogenetic distance (aka: comdist)
  • Morisita-Horn
  • Pearson product-moment correlation coefficient
  • Rao's Hp
  • Soergel (aka: Jaccard, unweighted UniFrac, Ruzicka, Marczewski-Steinhaus, percentage remoteness)
  • Tamas coefficient (TC) (aka: simple matching coefficient)
  • Weighted correlation
  • Whittaker index of association
  • Yue-Clayton (aka: similarity ratio)

Qualitative measures

  • Bray-Curtis (aka: Sorensen, PhyloSor, Dice)
  • Canberra
  • Coefficient of similarity
  • Euclidean
  • Gower
  • Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath)
  • Lennon compositional difference
  • Manhattan
  • Mean nearest neighbour distance (aka: comdistnn)
  • Mean phylogenetic distance (aka: comdist)
  • Pearson product-moment correlation coefficient
  • Soergel (aka: Jaccard, unweighted UniFrac)
  • Tamas coefficient (TC) (aka: simple matching coefficient)
  • Weighted correlation