Difference between revisions of "Useful Software"
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Jump to navigationJump to search (New page: == Machine Learning == * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ libSVM] - Support vector machine library for classification and/or regression. == Molecular Visualization == * [http:...) |
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== Machine Learning == | == Machine Learning == | ||
* [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ libSVM] - Support vector machine library for classification and/or regression. | * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ libSVM] - Support vector machine library for classification and/or regression. | ||
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== Molecular Visualization == | == Molecular Visualization == | ||
| − | * [http://www.ks.uiuc.edu/Research/vmd/ VMD] - 3D molecular visualization and animation. | + | * [http://www.ks.uiuc.edu/Research/vmd/ VMD] - 3D molecular visualization and animation. (Ubuntu: You'll need csh and libc++5 to have it running properly.) |
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== Phylogenetic Networks == | == Phylogenetic Networks == | ||
* [http://www.splitstree.org/ SplitsTree] - Computes phylogenetic trees and networks from molecular sequence data, distance matrices, etc. | * [http://www.splitstree.org/ SplitsTree] - Computes phylogenetic trees and networks from molecular sequence data, distance matrices, etc. | ||
| − | + | * [[RaxML]] - ML Phylogenies | |
== Statistical Analysis == | == Statistical Analysis == | ||
* [http://www.r-project.org/ R] - The R Project for Statistical Computing | * [http://www.r-project.org/ R] - The R Project for Statistical Computing | ||
| + | ** Scott has put together a few [[R Notes]] | ||
Latest revision as of 13:10, 14 June 2008
Contents
Machine Learning
- libSVM - Support vector machine library for classification and/or regression.
Molecular Visualization
- VMD - 3D molecular visualization and animation. (Ubuntu: You'll need csh and libc++5 to have it running properly.)
Phylogenetic Networks
- SplitsTree - Computes phylogenetic trees and networks from molecular sequence data, distance matrices, etc.
- RaxML - ML Phylogenies
