Difference between revisions of "GenGIS Tutorials"
| Line 13: | Line 13: | ||
* [[Media:GenGIS_Katydid_Tutorial.pdf|Download text tutorial]] | * [[Media:GenGIS_Katydid_Tutorial.pdf|Download text tutorial]] | ||
| − | * [[Media:GenGIS_Katydid_Movie.zip| | + | * [[Media:GenGIS_Katydid_Tutorial.swf|Stream]] or [[Media:GenGIS_Katydid_Movie.zip|download]] video tutorial (27 MB) |
* [[Media:GenGIS_Katydids_Data.zip|Download katydid data set]] | * [[Media:GenGIS_Katydids_Data.zip|Download katydid data set]] | ||
| − | |||
| − | |||
=== Tutorial 2: Marine Microbial Communities from the Atlantic Seaboard === | === Tutorial 2: Marine Microbial Communities from the Atlantic Seaboard === | ||
| Line 23: | Line 21: | ||
In this tutorial, we examine samples collected as part of the Global Ocean Sampling metagenomic survey [2] in order to investigate the influence of environmental factors on the composition of microbial communities from marine ecosystems. | In this tutorial, we examine samples collected as part of the Global Ocean Sampling metagenomic survey [2] in order to investigate the influence of environmental factors on the composition of microbial communities from marine ecosystems. | ||
| − | * [[Media:GenGIS_GOS_Movie.zip| | + | * [[Media:GenGIS_GOS_Tutorial.swf|Stream]] or [[Media:GenGIS_GOS_Movie.zip|download]] video tutorial (21 MB) |
* [[Media:GenGIS_GOS_Data.zip|Download GOS data set]] | * [[Media:GenGIS_GOS_Data.zip|Download GOS data set]] | ||
| − | |||
| − | |||
=== References === | === References === | ||
Revision as of 19:53, 18 May 2009
We have put together a few tutorials to get you quickly started with GenGIS.
Contents
Tutorial 0: Construct a Custom Digital Elevation Maps (DEM)
Instructions on how to contruct a custom DEM using the data available from the GTOPO30 site is available here.
Tutorial 1: Banza Katydids of the Hawaiian Islands
In this tutorial, we consider the phylogenetic tree of Banza katydids (acoustic insects) from the Hawaiian Islands recently recovered by Shapiro et al. [1]. GenGIS will be used to investigate whether or not this phylogeny is related to the geography of the Hawaiian Islands.
Tutorial 2: Marine Microbial Communities from the Atlantic Seaboard
In this tutorial, we examine samples collected as part of the Global Ocean Sampling metagenomic survey [2] in order to investigate the influence of environmental factors on the composition of microbial communities from marine ecosystems.
References
[1] L. H. Shapiro, J. S. Strazanac, and G. K. Roderick. (2006) Molecular phylogeny of Banza (Orthoptera: Tettigoniidae), the endemic katydids of the Hawaiian Archipelago. Mol. Phylogenet. Evol. 41:53-63. Pubmed
[2] D. Rusch, A. Halpern, G. Sutton, et al., (2007) "The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific," PLoS Biol. 5:e77. PubMed
