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==Quantitative measures== * Bray-Curtis (aka: normalized weighted UniFrac, percentage difference) * Canberra * Chi-squared * Coefficient of similarity * Complete tree * Euclidean * Fst * Gower * Hellinger * Kulczynski * Lennon compositional difference * Manhattan (aka: taxicab, city-block, unnormalized weighted UniFrac) * Mean nearest neighbour distance (aka: comdistnn) * Mean phylogenetic distance (aka: comdist) * Morisita-Horn * Pearson product-moment correlation coefficient * Rao's Hp * Soergel (aka: Jaccard, unweighted UniFrac, Ruzicka, Marczewski-Steinhaus, percentage remoteness) * Tamas coefficient (TC) (aka: simple matching coefficient) * Weighted correlation * Whittaker index of association * Yue-Clayton (aka: similarity ratio) ==Qualitative measures== * Bray-Curtis (aka: Sorensen, PhyloSor, Dice) * Canberra * Coefficient of similarity * Euclidean * Gower * Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath) * Lennon compositional difference * Manhattan * Mean nearest neighbour distance (aka: comdistnn) * Mean phylogenetic distance (aka: comdist) * Pearson product-moment correlation coefficient * Soergel (aka: Jaccard, unweighted UniFrac) * Tamas coefficient (TC) (aka: simple matching coefficient) * Weighted correlation

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