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Qualitative measures requiring a rooted split system: * Bray-Curtis (aka: Sorensen, PhyloSor, Dice's index, pairwise Whittaker) * Canberra * Coefficient of similarity * Euclidean * Gower * Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath) * Lennon compositional difference * Manhattan (aka: Hamming distance) * Soergel (aka: unweighted UniFrac, Jaccard) * Tamas coefficient (TC) (aka: simple matching coefficient) * Weighted correlation Quantitative measures requiring a rooted split system (use -w flag): * Bray-Curtis (aka: normalized weighted UniFrac, percentage difference) * Canberra * Coefficient of similarity * Complete tree * Euclidean * Gower * Kulczynski * Lennon compositional difference * Manhattan (aka: weighted UniFrac) * Morisita-Horn * Soergel (aka: Ruzicka, Marczewski-Steinhaus, percentage remoteness) * Tamas coefficient * Weighted correlation * Yue-Clayton (aka: similarity ratio) Root-invariant quantitative measures (use -w flag): * Complete tree * Euclidean * Gower * Manhattan (aka: weighted UniFrac)

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