Difference between revisions of "Supported Beta-diversity Measures"
From Bioinformatics Software
Jump to navigationJump to search| (4 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
| − | Quantitative measures | + | ==Quantitative measures== |
| − | * Bray-Curtis (aka: normalized weighted UniFrac | + | * Bray-Curtis (aka: normalized weighted UniFrac, percentage difference) |
* Canberra | * Canberra | ||
* Chi-squared | * Chi-squared | ||
| Line 9: | Line 9: | ||
* Gower | * Gower | ||
* Hellinger | * Hellinger | ||
| − | * Kulczynski | + | * Kulczynski |
* Lennon compositional difference | * Lennon compositional difference | ||
* Manhattan (aka: taxicab, city-block, unnormalized weighted UniFrac) | * Manhattan (aka: taxicab, city-block, unnormalized weighted UniFrac) | ||
| Line 18: | Line 18: | ||
* Rao's Hp | * Rao's Hp | ||
* Soergel (aka: Jaccard, unweighted UniFrac, Ruzicka, Marczewski-Steinhaus, percentage remoteness) | * Soergel (aka: Jaccard, unweighted UniFrac, Ruzicka, Marczewski-Steinhaus, percentage remoteness) | ||
| − | + | * Tamas coefficient (TC) (aka: simple matching coefficient) | |
| − | * Tamas coefficient (TC) (aka: simple matching coefficient) | + | * Weighted correlation |
* Whittaker index of association | * Whittaker index of association | ||
* Yue-Clayton (aka: similarity ratio) | * Yue-Clayton (aka: similarity ratio) | ||
| − | Qualitative measures | + | ==Qualitative measures== |
| − | * Bray-Curtis (aka: | + | * Bray-Curtis (aka: Sorensen, PhyloSor, Dice) |
* Canberra | * Canberra | ||
| − | |||
* Coefficient of similarity | * Coefficient of similarity | ||
| − | |||
* Euclidean | * Euclidean | ||
| − | |||
* Gower | * Gower | ||
| − | |||
* Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath) | * Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath) | ||
* Lennon compositional difference | * Lennon compositional difference | ||
| − | * Manhattan | + | * Manhattan |
* Mean nearest neighbour distance (aka: comdistnn) | * Mean nearest neighbour distance (aka: comdistnn) | ||
* Mean phylogenetic distance (aka: comdist) | * Mean phylogenetic distance (aka: comdist) | ||
| − | |||
* Pearson product-moment correlation coefficient | * Pearson product-moment correlation coefficient | ||
| − | + | * Soergel (aka: Jaccard, unweighted UniFrac) | |
| − | * Soergel (aka: Jaccard, unweighted UniFrac | ||
| − | |||
* Tamas coefficient (TC) (aka: simple matching coefficient) | * Tamas coefficient (TC) (aka: simple matching coefficient) | ||
| − | * | + | * Weighted correlation |
| − | |||
Latest revision as of 13:49, 8 June 2012
Quantitative measures
- Bray-Curtis (aka: normalized weighted UniFrac, percentage difference)
- Canberra
- Chi-squared
- Coefficient of similarity
- Complete tree
- Euclidean
- Fst
- Gower
- Hellinger
- Kulczynski
- Lennon compositional difference
- Manhattan (aka: taxicab, city-block, unnormalized weighted UniFrac)
- Mean nearest neighbour distance (aka: comdistnn)
- Mean phylogenetic distance (aka: comdist)
- Morisita-Horn
- Pearson product-moment correlation coefficient
- Rao's Hp
- Soergel (aka: Jaccard, unweighted UniFrac, Ruzicka, Marczewski-Steinhaus, percentage remoteness)
- Tamas coefficient (TC) (aka: simple matching coefficient)
- Weighted correlation
- Whittaker index of association
- Yue-Clayton (aka: similarity ratio)
Qualitative measures
- Bray-Curtis (aka: Sorensen, PhyloSor, Dice)
- Canberra
- Coefficient of similarity
- Euclidean
- Gower
- Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath)
- Lennon compositional difference
- Manhattan
- Mean nearest neighbour distance (aka: comdistnn)
- Mean phylogenetic distance (aka: comdist)
- Pearson product-moment correlation coefficient
- Soergel (aka: Jaccard, unweighted UniFrac)
- Tamas coefficient (TC) (aka: simple matching coefficient)
- Weighted correlation
