Difference between revisions of "STAMP example datasets"
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| − | The following data sets were analyzed in ''Identifying biologically important differences between pairs of metagenomic communities'' (Parks, | + | The following data sets were analyzed in ''Identifying biologically important differences between pairs of metagenomic communities'' (Parks, D.H. and Beiko, R.G., Bioinformatics, 2009 submitted): |
* [[Media:RedBlack.spf|SEED functional profile for Soudin iron mine metagenomes]] (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006]) | * [[Media:RedBlack.spf|SEED functional profile for Soudin iron mine metagenomes]] (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006]) | ||
Revision as of 16:46, 14 January 2010
The following data sets were analyzed in Identifying biologically important differences between pairs of metagenomic communities (Parks, D.H. and Beiko, R.G., Bioinformatics, 2009 submitted):
- SEED functional profile for Soudin iron mine metagenomes (data originally described in Edwards et al., 2006)
- SEED functional profile for Candidatus Accumulibacter phosphatis (data originally described in Martín et al., 2006)
The User's guide makes use of the following data set:
- SEED taxonomic profile for an obese and a lean mouse microbiome (data originally described in Turnbaugh et al., 2006)
STAMP is compatible with functional and taxonomic profiles generated by (see User's guide for details):
Note: these data sets and others can be found in the examples folder of STAMP.
