Difference between revisions of "Supported beta-diversity Measures"
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| − | Qualitative measures ( | + | Qualitative measures requiring a rooted split system: |
| − | * Bray-Curtis (aka: normalized weighted UniFrac | + | * Bray-Curtis (aka: Sorensen, PhyloSor, Dice's index, pairwise Whittaker) |
| + | * Canberra | ||
| + | * Coefficient of similarity | ||
| + | * Euclidean | ||
| + | * Gower | ||
| + | * Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath) | ||
| + | * Lennon compositional difference | ||
| + | * Manhattan (aka: Hamming distance) | ||
| + | * Soergel (aka: unweighted UniFrac, Jaccard) | ||
| + | * Tamas coefficient (TC) (aka: simple matching coefficient) | ||
| + | * Weighted correlation | ||
| + | |||
| + | Quantitative measures requiring a rooted split system (use -w flag): | ||
| + | * Bray-Curtis (aka: normalized weighted UniFrac, percentage difference) | ||
* Canberra | * Canberra | ||
| − | |||
* Coefficient of similarity | * Coefficient of similarity | ||
* Complete tree | * Complete tree | ||
| − | * | + | * Euclidean |
* Gower | * Gower | ||
| − | + | * Kulczynski | |
| − | * Kulczynski | ||
* Lennon compositional difference | * Lennon compositional difference | ||
| − | * | + | * Manhattan (aka: weighted UniFrac) |
| − | |||
* Morisita-Horn | * Morisita-Horn | ||
| − | + | * Soergel (aka: Ruzicka, Marczewski-Steinhaus, percentage remoteness) | |
| − | + | * Tamas coefficient | |
| − | * Soergel (aka: | + | * Weighted correlation |
| − | |||
| − | * Tamas coefficient | ||
| − | * | ||
* Yue-Clayton (aka: similarity ratio) | * Yue-Clayton (aka: similarity ratio) | ||
| − | + | Root-invariant quantitative measures (use -w flag): | |
| − | + | * Complete tree | |
| − | |||
| − | * | ||
* Euclidean | * Euclidean | ||
| + | * Gower | ||
| + | * Manhattan (aka: weighted UniFrac) | ||
Latest revision as of 21:33, 10 April 2012
Qualitative measures requiring a rooted split system:
- Bray-Curtis (aka: Sorensen, PhyloSor, Dice's index, pairwise Whittaker)
- Canberra
- Coefficient of similarity
- Euclidean
- Gower
- Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath)
- Lennon compositional difference
- Manhattan (aka: Hamming distance)
- Soergel (aka: unweighted UniFrac, Jaccard)
- Tamas coefficient (TC) (aka: simple matching coefficient)
- Weighted correlation
Quantitative measures requiring a rooted split system (use -w flag):
- Bray-Curtis (aka: normalized weighted UniFrac, percentage difference)
- Canberra
- Coefficient of similarity
- Complete tree
- Euclidean
- Gower
- Kulczynski
- Lennon compositional difference
- Manhattan (aka: weighted UniFrac)
- Morisita-Horn
- Soergel (aka: Ruzicka, Marczewski-Steinhaus, percentage remoteness)
- Tamas coefficient
- Weighted correlation
- Yue-Clayton (aka: similarity ratio)
Root-invariant quantitative measures (use -w flag):
- Complete tree
- Euclidean
- Gower
- Manhattan (aka: weighted UniFrac)
