Difference between revisions of "Supported Beta-diversity Measures"
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| − | + | =Quantitative measures= | |
* Bray-Curtis (aka: normalized weighted UniFrac, percentage difference) | * Bray-Curtis (aka: normalized weighted UniFrac, percentage difference) | ||
* Canberra | * Canberra | ||
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* Yue-Clayton (aka: similarity ratio) | * Yue-Clayton (aka: similarity ratio) | ||
| − | + | =Qualitative measures= | |
| − | |||
* Bray-Curtis (aka: Sorensen, PhyloSor, Dice) | * Bray-Curtis (aka: Sorensen, PhyloSor, Dice) | ||
* Canberra | * Canberra | ||
Revision as of 13:48, 8 June 2012
Quantitative measures
- Bray-Curtis (aka: normalized weighted UniFrac, percentage difference)
- Canberra
- Chi-squared
- Coefficient of similarity
- Complete tree
- Euclidean
- Fst
- Gower
- Hellinger
- Kulczynski
- Lennon compositional difference
- Manhattan (aka: taxicab, city-block, unnormalized weighted UniFrac)
- Mean nearest neighbour distance (aka: comdistnn)
- Mean phylogenetic distance (aka: comdist)
- Morisita-Horn
- Pearson product-moment correlation coefficient
- Rao's Hp
- Soergel (aka: Jaccard, unweighted UniFrac, Ruzicka, Marczewski-Steinhaus, percentage remoteness)
- Tamas coefficient (TC) (aka: simple matching coefficient)
- Weighted correlation
- Whittaker index of association
- Yue-Clayton (aka: similarity ratio)
Qualitative measures
- Bray-Curtis (aka: Sorensen, PhyloSor, Dice)
- Canberra
- Coefficient of similarity
- Euclidean
- Gower
- Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath)
- Lennon compositional difference
- Manhattan
- Mean nearest neighbour distance (aka: comdistnn)
- Mean phylogenetic distance (aka: comdist)
- Pearson product-moment correlation coefficient
- Soergel (aka: Jaccard, unweighted UniFrac)
- Tamas coefficient (TC) (aka: simple matching coefficient)
- Weighted correlation
