Difference between revisions of "STAMP example datasets"

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The following datasets were analyzed in ''Identifying biologically important differences between pairs of metagenomic communities'' (Parks et al., Bioinformatics, submitted):  
 
The following datasets were analyzed in ''Identifying biologically important differences between pairs of metagenomic communities'' (Parks et al., Bioinformatics, submitted):  
  
* SEED profile for Soudin iron mine metagenomes (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006])
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* [[RedBlack.spf SEED profile for Soudin iron mine metagenomes]] (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006])
 
* SEED profile for Candidatus Accumulibacter phosphatis (data originally described in  [http://www.ncbi.nlm.nih.gov/pubmed/16998472 Martín et al., 2006])
 
* SEED profile for Candidatus Accumulibacter phosphatis (data originally described in  [http://www.ncbi.nlm.nih.gov/pubmed/16998472 Martín et al., 2006])
  

Revision as of 06:13, 22 November 2009

The following datasets were analyzed in Identifying biologically important differences between pairs of metagenomic communities (Parks et al., Bioinformatics, submitted):


The User's guide makes use of the following dataset:


STAMP is compatible with functional and taxonomic profiles generated by (see User's guide for details):