Difference between revisions of "Supported Beta-diversity Measures"
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| + | Quantitative measures: | ||
| + | * Bray-Curtis (aka: normalized weighted UniFrac, Sorensen, Steinhaus, Odum, percentage difference, pairwise Whittaker) | ||
| + | * Canberra | ||
| + | * Chi-squared | ||
| + | * Coefficient of similarity | ||
| + | * Complete tree | ||
| + | * Euclidean | ||
| + | * Fst | ||
| + | * Gower | ||
| + | * Hellinger | ||
| + | * Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath) | ||
| + | * Lennon compositional difference | ||
| + | * Manhattan (aka: taxicab, city-block, unnormalized weighted UniFrac) | ||
| + | * Mean nearest neighbour distance (aka: comdistnn) | ||
| + | * Mean phylogenetic distance (aka: comdist) | ||
| + | * Morisita-Horn | ||
| + | * Pearson product-moment correlation coefficient | ||
| + | * Rao's Hp | ||
| + | * Soergel (aka: Jaccard, unweighted UniFrac, Ruzicka, Marczewski-Steinhaus, percentage remoteness) | ||
| + | * Species profile | ||
| + | * Tamas coefficient (TC) (aka: simple matching coefficient) | ||
| + | * Whittaker index of association | ||
| + | * Yue-Clayton (aka: similarity ratio) | ||
| + | |||
| + | Qualitative measures: | ||
* Bray-Curtis (aka: normalized weighted UniFrac, Sorensen, Steinhaus, Odum, percentage difference, pairwise Whittaker) | * Bray-Curtis (aka: normalized weighted UniFrac, Sorensen, Steinhaus, Odum, percentage difference, pairwise Whittaker) | ||
* Canberra | * Canberra | ||
Revision as of 13:36, 8 June 2012
Quantitative measures:
- Bray-Curtis (aka: normalized weighted UniFrac, Sorensen, Steinhaus, Odum, percentage difference, pairwise Whittaker)
- Canberra
- Chi-squared
- Coefficient of similarity
- Complete tree
- Euclidean
- Fst
- Gower
- Hellinger
- Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath)
- Lennon compositional difference
- Manhattan (aka: taxicab, city-block, unnormalized weighted UniFrac)
- Mean nearest neighbour distance (aka: comdistnn)
- Mean phylogenetic distance (aka: comdist)
- Morisita-Horn
- Pearson product-moment correlation coefficient
- Rao's Hp
- Soergel (aka: Jaccard, unweighted UniFrac, Ruzicka, Marczewski-Steinhaus, percentage remoteness)
- Species profile
- Tamas coefficient (TC) (aka: simple matching coefficient)
- Whittaker index of association
- Yue-Clayton (aka: similarity ratio)
Qualitative measures:
- Bray-Curtis (aka: normalized weighted UniFrac, Sorensen, Steinhaus, Odum, percentage difference, pairwise Whittaker)
- Canberra
- Chi-squared
- Coefficient of similarity
- Complete tree
- Euclidean
- Fst
- Gower
- Hellinger
- Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath)
- Lennon compositional difference
- Manhattan (aka: taxicab, city-block, unnormalized weighted UniFrac)
- Mean nearest neighbour distance (aka: comdistnn)
- Mean phylogenetic distance (aka: comdist)
- Morisita-Horn
- Pearson product-moment correlation coefficient
- Rao's Hp
- Soergel (aka: Jaccard, unweighted UniFrac, Ruzicka, Marczewski-Steinhaus, percentage remoteness)
- Species profile
- Tamas coefficient (TC) (aka: simple matching coefficient)
- Whittaker index of association
- Yue-Clayton (aka: similarity ratio)
