Difference between revisions of "Main Page"
From Bioinformatics Software
Jump to navigationJump to search| Line 11: | Line 11: | ||
== Software == | == Software == | ||
| + | Key: P = phylogenetics, S = statistics, B = biogeography, V = visualization, G = genomics, M = metagenomics, L = lateral genetic transfer | ||
| − | * [http://kiwi.cs.dal.ca/GenGIS GenGIS]: an application that allows users to combine digital map data with information about biological sequences collected from the environment. GenGIS provides a 3D graphical interface in which the user can navigate and explore the data, as well as a Python interface that allows easy scripting of statistical analyses using the Rpy libraries. | + | |
| − | * [http://kiwi.cs.dal.ca/~beiko/software-and-data/radie Radié]: a tool that allows characters to be visualized against the background of a phylogenetic tree. The software includes several different visual and numeric representations of the ‘convexity’ of a given character, in other words the extent to which different character traits form distinct groups within the tree. | + | * [http://kiwi.cs.dal.ca/GenGIS GenGIS]: an application that allows users to combine digital map data with information about biological sequences collected from the environment. GenGIS provides a 3D graphical interface in which the user can navigate and explore the data, as well as a Python interface that allows easy scripting of statistical analyses using the Rpy libraries. (PSBVM) |
| − | * STAMP: | + | |
| + | * [http://kiwi.cs.dal.ca/~beiko/software-and-data/radie Radié]: a tool that allows characters to be visualized against the background of a phylogenetic tree. The software includes several different visual and numeric representations of the ‘convexity’ of a given character, in other words the extent to which different character traits form distinct groups within the tree. (PV) | ||
| + | |||
| + | * STAMP: (SMV) | ||
| + | |||
| + | * EvolSimulator: A simulation test bed for hypotheses of genome evolution. (PL) | ||
| + | |||
| + | * EEEP (Efficient Evaluation of Edit Paths): software to infer putative pathways of lateral genetic transfer by comparing gene trees against a rooted reference tree (PL) | ||
| + | |||
| + | * VAREB? | ||
| + | |||
| + | * WOOF? | ||
| + | |||
| + | * GANN? | ||
== Web Services == | == Web Services == | ||
Revision as of 01:29, 18 November 2009
Using GenGIS to investigate the distribution of photorhodopsin genes around the Galapagos Islands (data courtesy of <Rob... who did we get this data from - Adrian?>).
Welcome to the Bioinformatics Software and Resources page.
<-- Can someone come up with a logo?
<-- Cool molecule icon added by Mr. Parks
http://commons.wikimedia.org/wiki/File:HILLGIALLO_molecola.png
Software
Key: P = phylogenetics, S = statistics, B = biogeography, V = visualization, G = genomics, M = metagenomics, L = lateral genetic transfer
- GenGIS: an application that allows users to combine digital map data with information about biological sequences collected from the environment. GenGIS provides a 3D graphical interface in which the user can navigate and explore the data, as well as a Python interface that allows easy scripting of statistical analyses using the Rpy libraries. (PSBVM)
- Radié: a tool that allows characters to be visualized against the background of a phylogenetic tree. The software includes several different visual and numeric representations of the ‘convexity’ of a given character, in other words the extent to which different character traits form distinct groups within the tree. (PV)
- STAMP: (SMV)
- EvolSimulator: A simulation test bed for hypotheses of genome evolution. (PL)
- EEEP (Efficient Evaluation of Edit Paths): software to infer putative pathways of lateral genetic transfer by comparing gene trees against a rooted reference tree (PL)
- VAREB?
- WOOF?
- GANN?
Web Services
- SeqMontior
- MOA (to be added)
- Visual MOA (to be added)
- MANUEL
