Difference between revisions of "STAMP example datasets"
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* [http://metagenomics.nmpdr.org/ MG-RAST] | * [http://metagenomics.nmpdr.org/ MG-RAST] | ||
| − | * [http://img.jgi.doe.gov/cgi-bin/m/main.cgi IMG/M] | + | * [http://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=AbundanceProfiles&page=mergedForm IMG/M] |
'''Note''': these data sets and others can be found in the <tt>examples</tt> folder of STAMP. | '''Note''': these data sets and others can be found in the <tt>examples</tt> folder of STAMP. | ||
Revision as of 02:22, 20 July 2010
The following data sets were analyzed in Parks, D.H. and Beiko, R.G. (2010). Identifying biologically relevant differences between metagenomic communities. Bioinformatics, 26, 715-721. (Abstract):
- SEED functional profile for Soudin iron mine metagenomes (data originally described in Edwards et al., 2006)
- SEED functional profile for Candidatus Accumulibacter phosphatis (data originally described in Martín et al., 2006)
The User's guide makes use of the following data set:
- SEED taxonomic profile for an obese and a lean mouse microbiome (data originally described in Turnbaugh et al., 2006)
STAMP is compatible with functional and taxonomic profiles generated by (see User's guide for details):
Note: these data sets and others can be found in the examples folder of STAMP.
