R Notes
From Bioinformatics Software
Jump to navigationJump to searchContents
A few very basic R examples
Loading a plain CSV file into a vector
myvector = read.csv(file="path_to_csv_file", header=FALSE)
- You may then access each of the individual components using myvector[,1], myvector[,2], ... myvector[,n]
Scatterplot two components of a vector
In this example, myvector has 4 components and we want to plot the 3rd and 4th
plot(myvector[,3], myvector[,4], main="This is the title of the plot")
Plot a simple histogram
hist(myvector[,3])
- Also try density(myvector[,3]) for a density-plot
Linear regression
mymodel = lm(myvector[,3] ~ myvector[,4]) summary(mymodel)
Squeeze multiple plots onto a page ( 4x4 in this example )
par(cfrow = c(4,4)) # or par(cfcol = c(4,4)) plot(myvector[,3], myvector[,4]) plot(myvector[,3], myvector[,4]) plot(myvector[,3], myvector[,4]) plot(myvector[,3], myvector[,4])
For loops
for (i in 1:100) { do_something_useful }