STAMP example datasets

The following data sets were analyzed in Parks, D.H. and Beiko, R.G. (2010). Identifying biologically relevant differences between metagenomic communities. Bioinformatics, 26, 715-721. (Abstract):

• SEED functional profile for Soudin iron mine metagenomes (data originally described in Edwards et al., 2006)
• SEED functional profile for Candidatus Accumulibacter phosphatis (data originally described in Martín et al., 2006)

The User's guide makes use of the following data set:

• SEED taxonomic profile for an obese and a lean mouse microbiome (data originally described in Turnbaugh et al., 2006)

STAMP is compatible with functional and taxonomic profiles generated by (see User's guide for details):

• MG-RAST
• IMG/M

Note: additional datasets can be found in the examples folder of STAMP.