STAMP example datasets

The following data sets were analyzed in Parks, DH, Tyson GW, Hugenholtz P, Beiko RG. (2014). STAMP: Statistical analysis of taxonomic and functional profiles. Submitted to Bioinformatics in June, 2014.:

• Taxonomic profiles of coal seam gas communities and COG profiles for Cyanobacterial genomes.

The following data sets were analyzed in Parks, DH and Beiko, RG. (2010). Identifying biologically relevant differences between metagenomic communities. Bioinformatics, 26, 715-721. (Abstract):

• SEED functional profile for Soudin iron mine metagenomes (data originally described in Edwards et al., 2006)
• SEED functional profile for Candidatus Accumulibacter phosphatis (data originally described in Martín et al., 2006)

The User's guide makes use of the following data set:

• SEED taxonomic profile for an obese and a lean mouse microbiome (data originally described in Turnbaugh et al., 2006)

Note: additional datasets can be found in the examples folder of STAMP or downloaded here.