Difference between revisions of "STAMP example datasets"
From Bioinformatics Software
Jump to navigationJump to search| Line 1: | Line 1: | ||
| − | The following | + | All the data sets listed here are included in the ''examples'' folder of STAMP. |
| + | |||
| + | The following data sets were analyzed in ''Identifying biologically important differences between pairs of metagenomic communities'' (Parks et al., Bioinformatics, submitted): | ||
* [[Media:RedBlack.spf|SEED functional profile for Soudin iron mine metagenomes]] (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006]) | * [[Media:RedBlack.spf|SEED functional profile for Soudin iron mine metagenomes]] (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006]) | ||
| Line 5: | Line 7: | ||
| − | The User's guide makes use of the following | + | The User's guide makes use of the following data set: |
* [[Media:MouseTurnbaughMG-RAST_Functional.spf|SEED taxonomic profile for an obese and lean mouse microbiome]] (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/17183312 Turnbaugh et al., 2006]) | * [[Media:MouseTurnbaughMG-RAST_Functional.spf|SEED taxonomic profile for an obese and lean mouse microbiome]] (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/17183312 Turnbaugh et al., 2006]) | ||
Revision as of 02:10, 8 December 2009
All the data sets listed here are included in the examples folder of STAMP.
The following data sets were analyzed in Identifying biologically important differences between pairs of metagenomic communities (Parks et al., Bioinformatics, submitted):
- SEED functional profile for Soudin iron mine metagenomes (data originally described in Edwards et al., 2006)
- SEED functional profile for Candidatus Accumulibacter phosphatis (data originally described in Martín et al., 2006)
The User's guide makes use of the following data set:
- SEED taxonomic profile for an obese and lean mouse microbiome (data originally described in Turnbaugh et al., 2006)
STAMP is compatible with functional and taxonomic profiles generated by (see User's guide for details):
