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- RITA
- RSPR
- RSPR README
- RSPR version history
- R Notes
- RaxML
- SPANNER
- SPRSupertrees
- SPR Supertrees README
- SPR Supertrees example datasets
- SPR Supertrees version history
- STAMP
- STAMP FAQs
- STAMP example datasets
- STAMP image gallery
- STAMP v1.08.1 patch
- STAMP v1.08 example datasets
- STAMP v1.08 image gallery
- STAMP version history
- Schedule
- SimDEF
- Supported Beta-diversity Measures
- Supported beta-diversity Measures
- Useful Software