Difference between revisions of "Useful Software"

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== Molecular Visualization ==
 
== Molecular Visualization ==
* [http://www.ks.uiuc.edu/Research/vmd/ VMD] - 3D molecular visualization and animation.
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* [http://www.ks.uiuc.edu/Research/vmd/ VMD] - 3D molecular visualization and animation. (Ubuntu: You'll need csh and libc++5 to have it running properly.)
 
 
  
 
== Phylogenetic Networks ==
 
== Phylogenetic Networks ==
 
* [http://www.splitstree.org/ SplitsTree] - Computes phylogenetic trees and networks from molecular sequence data, distance matrices, etc.
 
* [http://www.splitstree.org/ SplitsTree] - Computes phylogenetic trees and networks from molecular sequence data, distance matrices, etc.
* [http://icwww.epfl.ch/~stamatak/index-Dateien/Page443.htm RaxML] - ML Phylogenies
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* [[RaxML]] - ML Phylogenies
  
 
== Statistical Analysis ==
 
== Statistical Analysis ==
 
* [http://www.r-project.org/ R] - The R Project for Statistical Computing
 
* [http://www.r-project.org/ R] - The R Project for Statistical Computing
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** Scott has put together a few [[R Notes]]

Latest revision as of 10:10, 14 June 2008

Machine Learning

  • libSVM - Support vector machine library for classification and/or regression.


Molecular Visualization

  • VMD - 3D molecular visualization and animation. (Ubuntu: You'll need csh and libc++5 to have it running properly.)

Phylogenetic Networks

  • SplitsTree - Computes phylogenetic trees and networks from molecular sequence data, distance matrices, etc.
  • RaxML - ML Phylogenies

Statistical Analysis

  • R - The R Project for Statistical Computing
    • Scott has put together a few R Notes