Useful Software

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Machine Learning

  • libSVM - Support vector machine library for classification and/or regression.

Molecular Visualization

  • VMD - 3D molecular visualization and animation.

Phylogenetic Networks

  • SplitsTree - Computes phylogenetic trees and networks from molecular sequence data, distance matrices, etc.
  • RaxML - ML Phylogenies

Statistical Analysis

  • R - The R Project for Statistical Computing