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Naive Bayes classifier for assigning fragments to their source genome.


This software is released under the GNU General Public License v3.0.


The following file contains an automated installation script for building models from all bacterial and archaeal genomes in the NCBI RefSeq database:

Contact Information

Our Naive Bayes classifier is in active development and we are interested in discussing all potential applications of this software. We encourage you to send us suggestions for new features. Suggestions, comments, and bug reports can be sent to Rob Beiko (beiko [at] If reporting a bug, please provide as much information as possible and a simplified version of the data set which causes the bug. This will allow us to quickly resolve the issue.

Citing the Naive Bayes classifier

If you find this software helpful in your research, please cite:

Parks, D.H., MacDonald, N.J., and Beiko, R.G. (2010). Classify short genomic fragments from unrepresented lineages using Naïve Bayes and BLAST. (Submitted to ISMB, 2011)


The development and deployment of this software has been supported by several organizations: