File list

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File list
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Date Name Thumbnail Size User Description Versions
20:54, 23 June 2008 RobRSSfeeds.xml.gz (file) 945 bytes Beiko   1
14:47, 10 May 2011 CreateProfileDlg.zip (file) 2 KB Dparks   4
14:48, 10 May 2011 CreateProfileDlg patch.zip (file) 2 KB Dparks   1
19:59, 4 August 2014 CheckHierarchy.zip (file) 2 KB Dparks   1
21:17, 23 June 2008 ESconfig.tar.gz (file) 3 KB Beiko   1
13:24, 1 May 2015 Guppy primers.txt (file) 5 KB Beiko   1
01:30, 18 November 2009 StampIcon.png (file) 7 KB Dparks Program icon by Caihua (http://commons.wikimedia.org/wiki/File:Fairytale_colors.png) 1
18:40, 10 April 2012 README NetworkDiversity.txt (file) 8 KB Dparks   1
10:06, 9 July 2012 244 taxa chosen.txt (file) 8 KB Whidden   1
01:11, 3 June 2013 README EBD.txt (file) 9 KB Dparks   7
11:14, 6 December 2011 README.txt (file) 11 KB Dparks Reverted to version as of 14:56, 3 November 2011 5
02:23, 22 November 2009 IronMineSequenceHistogram.png (file) 13 KB Dparks Sequence histogram for a pair of iron mine metagenomes (data described in Edwards et al., 2006). 1
15:10, 18 December 2012 SPANNER.tar.gz (file) 13 KB Mporter v1.0.0; initial release 1
17:44, 26 July 2013 README RSPR.txt (file) 14 KB Cwhidden   3
02:52, 22 November 2009 IronMine pValueHistogram.png (file) 15 KB Dparks p-value histogram for a pair of iron mine metagenomes (data described in Edwards et al., 2006). 1
14:32, 26 April 2013 README SPR Supertrees.txt (file) 16 KB Cwhidden   11
10:06, 9 July 2012 244 taxa supertree.newick (file) 17 KB Whidden   1
02:36, 22 November 2009 MultipleComparisonPlots StoreyFDR.png (file) 20 KB Dparks Multiple comparison plots for analyzing the effects of Storey's false discovery rate method (see Leek and Storey, 2008). 1
14:22, 6 March 2012 RITA v1 0 1.zip (file) 25 KB Dparks   1
18:47, 12 July 2011 RITA v1 0 0.zip (file) 26 KB Norman   1
14:01, 19 March 2010 Rspr 1 00 source.zip (file) 29 KB Cwhidden rSPR software version 1.00 1
14:25, 23 March 2010 Rspr 1 01 source.zip (file) 35 KB Cwhidden   2
13:34, 1 May 2015 MEGASAT Example.fastq (file) 36 KB Beiko   1
23:07, 7 December 2009 MartinEBPR A phosphatis.spf (file) 41 KB Dparks SEED functional profile for Candidatus Accumulibacter phosphatis (data originally described in Martín et al., 2006) . 1
12:26, 17 July 2010 EBPR Aphosphatis ScatterplotHistogram.png (file) 43 KB Dparks Scatterplot with histograms showing the functional profile of A.phosphatis sequences from EBPR communities in the USA and Australia. 1
23:09, 7 December 2009 MouseTurnbaughMG-RAST Functional.spf (file) 44 KB Dparks SEED taxonomic profile for an obese and lean mouse microbiome (data originally described in Turnbaugh et al., 2006) . 1
13:27, 29 November 2009 EBPR ScatterPlot.png (file) 46 KB Dparks SEED subsystem scatter plot for a pair of enhanced biological phosphorus removal (EBPR) sludge metagenomes (data from Martín et al., 2006]). 2
21:15, 23 June 2008 BeikoCharleboisDoolittleFig3.pdf (file) 48 KB Beiko   1
21:17, 23 June 2008 NBLASTP.tar.gz (file) 48 KB Beiko   1
09:59, 6 June 2008 Test.pdf (file) 49 KB Christian Solutions to Chapter 2 (exercises) 1
03:14, 22 November 2009 MouseTurnbaugh.spf (file) 53 KB Dparks Functional profile for an obese and lean mouse microbiome (data originally described in Turnbaugh et al., 2006). 1
09:33, 11 August 2011 ArumugamBoxPlot.png (file) 55 KB Dparks Box plot of Arumugam et al. enterotype data. 1
21:12, 23 June 2008 HGTchapter-Figure2.pdf (file) 56 KB Beiko   1
00:41, 18 November 2009 RedBlackErrorBar.png (file) 56 KB Dparks Using STAMP to identify SEED subsystems which are differentially abundant in a pair of iron mine metagenomes (data original described in Edwards et al., 2006). 2
11:06, 11 August 2011 STAMP2 IronMinSequenceHistogram.png (file) 59 KB Dparks Sequence histogram for a pair of iron mine metagenomes. 1
12:28, 3 November 2011 Rspr 1 02 source.zip (file) 63 KB Cwhidden   2
11:36, 3 May 2012 Rspr 1 03 source.zip (file) 64 KB Cwhidden   3
15:38, 2 November 2011 Spr supertrees 1 0 0.zip (file) 64 KB Cwhidden   2
13:24, 29 November 2009 TurnbaughMouseProfilePlot.png (file) 64 KB Dparks Taxonomy profile plot for an obese and lean mouse microbiome(data from described in Turnbaugh et al., 2006). 3
11:11, 11 August 2011 STAMP2 IronMine pValueHistogram.png (file) 66 KB Dparks p-value histogram for two iron mine metagenomes 1
09:33, 11 August 2011 ArumugamPostHocPlot.png (file) 67 KB Dparks Post-hoc plot of Arumugam et al. enterotype data. 1
11:02, 11 August 2011 STAMP2 EBPR ScatterPlot.png (file) 69 KB Dparks SEED subsystem scatter plot for a pair of enhanced biological phosphorus removal (EBPR) sludge metagenomes. 1
21:12, 23 June 2008 HGTchapter-Figure1.pdf (file) 74 KB Beiko   1
10:22, 11 July 2012 Rspr 1 1 0 source.zip (file) 78 KB Whidden   2
15:06, 21 January 2013 Rspr 1 1 1 source.zip (file) 78 KB Cwhidden   1
15:24, 9 February 2011 FCP 1 0 0.tar.gz (file) 81 KB Dparks FCP v1.0.0 9
11:18, 28 April 2011 FCP 1 0 1.tar.gz (file) 82 KB Dparks FCP v1.0.1 1
17:34, 3 June 2011 FCP 1 0 2.tar.gz (file) 82 KB Dparks FCP v1.0.2 7
10:36, 13 July 2011 FCP 1 0 3.tar.gz (file) 82 KB Dparks FCP v1.0.3 1
09:32, 11 August 2011 ArumugamBarPlot.png (file) 84 KB Dparks Bar plot of Arumugam et al. enterotype data. 1
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