File list

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This special page shows all uploaded files.

File list
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Date Name Thumbnail Size User Description Versions
12:59, 6 June 2008 Test.pdf (file) 49 KB Christian Solutions to Chapter 2 (exercises) 1
16:46, 17 June 2008 Algorithms.tar.gz (file) 1.81 MB Insilicool   1
16:47, 17 June 2008 DataStructure.tar.gz (file) 786 KB Insilicool   1
23:54, 23 June 2008 RobRSSfeeds.xml.gz (file) 945 bytes Beiko   1
00:07, 24 June 2008 Beiko et al 2008 043 R1.doc (file) 152 KB Beiko   1
00:10, 24 June 2008 FOSS4G 2008 Abstract.pdf (file) 135 KB Beiko Abstract for FOSS4G conference (Genomic GIS) 1
00:12, 24 June 2008 HGTchapter-maintext.pdf (file) 142 KB Beiko   1
00:12, 24 June 2008 HGTchapter-Figure1.pdf (file) 74 KB Beiko   1
00:12, 24 June 2008 HGTchapter-Figure2.pdf (file) 56 KB Beiko   1
00:14, 24 June 2008 BeikoCharleboisDoolittleFig1.pdf (file) 120 KB Beiko   1
00:15, 24 June 2008 BeikoCharleboisDoolittleFig2.pdf (file) 294 KB Beiko   1
00:15, 24 June 2008 BeikoCharleboisDoolittleFig3.pdf (file) 48 KB Beiko   1
00:15, 24 June 2008 BeikoCharleboisDoolittleFig4.pdf (file) 111 KB Beiko   1
00:16, 24 June 2008 BeikoCharleboisDoolittleFig5.pdf (file) 150 KB Beiko   1
00:16, 24 June 2008 BeikoCharleboisDoolittleFig6.pdf (file) 223 KB Beiko   1
00:16, 24 June 2008 BeikoCharleboisDoolittleFig7.pdf (file) 144 KB Beiko   1
00:16, 24 June 2008 BeikoCharleboisDoolittleFig8.pdf (file) 225 KB Beiko   1
00:16, 24 June 2008 BeikoCharleboisDoolittleSupFig1.pdf (file) 115 KB Beiko   1
00:17, 24 June 2008 NBLASTP.tar.gz (file) 48 KB Beiko   1
00:17, 24 June 2008 ESconfig.tar.gz (file) 3 KB Beiko   1
03:55, 17 November 2009 GenGIS galapagos.jpg (file) 93 KB Dparks Using GenGIS to investigate the distribution of photorhodopsin genes around the Galapagos Islands. 1
03:41, 18 November 2009 RedBlackErrorBar.png (file) 56 KB Dparks Using STAMP to identify SEED subsystems which are differentially abundant in a pair of iron mine metagenomes (data original described in Edwards et al., 2006). 2
04:30, 18 November 2009 StampIcon.png (file) 7 KB Dparks Program icon by Caihua (http://commons.wikimedia.org/wiki/File:Fairytale_colors.png) 1
05:23, 22 November 2009 IronMineSequenceHistogram.png (file) 13 KB Dparks Sequence histogram for a pair of iron mine metagenomes (data described in Edwards et al., 2006). 1
05:36, 22 November 2009 MultipleComparisonPlots StoreyFDR.png (file) 20 KB Dparks Multiple comparison plots for analyzing the effects of Storey's false discovery rate method (see Leek and Storey, 2008). 1
05:52, 22 November 2009 IronMine pValueHistogram.png (file) 15 KB Dparks p-value histogram for a pair of iron mine metagenomes (data described in Edwards et al., 2006). 1
05:58, 22 November 2009 RumenErrorBarPlot.png (file) 125 KB Dparks Extended error bar plot for a pair of bovine rumen microbiomes (data described in Brulc et al., 2009). 1
06:12, 22 November 2009 RedBlack.spf (file) 134 KB Dparks SEED profile for Soudin iron mine metagenomes (data originally described in Edwards et al., 2006). 1
06:14, 22 November 2009 MouseTurnbaugh.spf (file) 53 KB Dparks Functional profile for an obese and lean mouse microbiome (data originally described in Turnbaugh et al., 2006). 1
16:02, 29 November 2009 STAMP Screenshot.png (file) 87 KB Dparks STAMP v1.0 screenshot (Windows XP). 2
16:24, 29 November 2009 TurnbaughMouseProfilePlot.png (file) 64 KB Dparks Taxonomy profile plot for an obese and lean mouse microbiome(data from described in Turnbaugh et al., 2006). 3
16:27, 29 November 2009 EBPR ScatterPlot.png (file) 46 KB Dparks SEED subsystem scatter plot for a pair of enhanced biological phosphorus removal (EBPR) sludge metagenomes (data from Martín et al., 2006]). 2
00:30, 30 November 2009 STAMP 1.0 source.zip (file) 1,000 KB Dparks STAMP v1.0 source code. 2
20:26, 30 November 2009 STAMP OSX screenshot.png (file) 255 KB Dparks STAMP screenshot (Apple's Mac OS X Leopard). 1
15:54, 4 December 2009 STAMP XP Screenshot.png (file) 99 KB Dparks Screen capture of STAMP v1.0 on Microsoft Windows XP. 2
23:45, 4 December 2009 STAMP Windows7 Screenshot.png (file) 211 KB Dparks Screen capture of STAMP v1.0 on Microsoft Windows 7 (x64). 3
02:07, 8 December 2009 MartinEBPR A phosphatis.spf (file) 41 KB Dparks SEED functional profile for Candidatus Accumulibacter phosphatis (data originally described in Martín et al., 2006) . 1
02:09, 8 December 2009 MouseTurnbaughMG-RAST Functional.spf (file) 44 KB Dparks SEED taxonomic profile for an obese and lean mouse microbiome (data originally described in Turnbaugh et al., 2006) . 1
21:00, 9 December 2009 STAMP 1.0 Setup Win32.exe (file) 19.44 MB Dparks   3
17:35, 10 December 2009 STAMP 1 0 source.zip (file) 876 KB Dparks STAMP v1.0 source code. 2
18:56, 10 December 2009 STAMP 1.0 Setup.exe (file) 19.43 MB Dparks STAMP v1.0 Windows binary. 2
15:48, 14 January 2010 STAMP 1 01 source.zip (file) 992 KB Dparks STAMP v1.01 source code. 2
16:50, 14 January 2010 STAMP 1.01 Setup.exe (file) 17.32 MB Dparks STAMP v1.01 Microsoft Windows setup file. 1
15:19, 10 March 2010 STAMP 1 01 Mac OSX.zip (file) 71.62 MB Mporter   4
15:02, 18 March 2010 STAMP 1 02 source.zip (file) 879 KB Dparks STAMP v1.02 source code. 1
15:22, 18 March 2010 STAMP 1.02 Setup.exe (file) 17.38 MB Dparks STAMP v1.02 from Microsoft Windows. 1
17:01, 19 March 2010 Rspr 1 00 source.zip (file) 29 KB Cwhidden rSPR software version 1.00 1
17:25, 23 March 2010 Rspr 1 01 source.zip (file) 35 KB Cwhidden   2
13:47, 12 April 2010 STAMP 1 03 source.zip (file) 881 KB Dparks STAMP v1.03 source code. 1
13:57, 12 April 2010 STAMP 1.03 Setup.exe (file) 17.33 MB Dparks STAMP v1.03 setup file for Microsoft Windows. 1
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